GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002244-TA|BGIBMGA002244-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (91 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    25   1.8  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    25   1.8  

>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
          Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 6  IPLSELDYIEMRRHGKRLAVPFV 28
          IPL  LDY+   R   R  VPFV
Sbjct: 44 IPLDGLDYLATVREEARKLVPFV 66


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
          Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 6  IPLSELDYIEMRRHGKRLAVPFV 28
          IPL  LDY+   R   R  VPFV
Sbjct: 44 IPLDGLDYLATVREEARKLVPFV 66


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.333    0.143    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 392,339
Number of Sequences: 5004
Number of extensions: 11864
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 2
length of query: 91
length of database: 2,362,478
effective HSP length: 61
effective length of query: 30
effective length of database: 2,057,234
effective search space: 61717020
effective search space used: 61717020
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.5 bits)
S2: 46 (22.6 bits)