GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002244-TA|BGIBMGA002244-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (91 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0847 + 28186873-28188147                                         26   3.4  
01_07_0259 - 42353992-42354111,42354255-42354385,42355484-423555...    26   3.4  
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072...    26   4.5  
07_03_1608 - 28125301-28126063,28127030-28127139,28127222-281277...    25   7.8  
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    25   7.8  

>03_05_0847 + 28186873-28188147
          Length = 424

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 1   MVISWIPLSELDYIEMRRHGKRLAVPFVELTVTHASVLTILAISFER 47
           +++  + +    Y+  RR G RL + FV+ +    S  +  A++ E+
Sbjct: 184 LIVDAVVVRPRGYLHARRQGGRLLLSFVDCSAREQSAASKAAVATEK 230


>01_07_0259 -
           42353992-42354111,42354255-42354385,42355484-42355571,
           42356439-42357282,42357354-42357934,42358962-42359159
          Length = 653

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 6   IPLSELDYIEMRRH-GKRLAVPFVELTVTHASVLTILAISFERYYA 50
           + L+ L  + M R  G R AVP   +TVT  +   + A  F+R  A
Sbjct: 319 VSLTVLQALTMDRAVGPRFAVPAASITVTVLAAFVLAAALFDRVAA 364


>07_03_1362 -
           26006159-26006461,26006691-26006841,26006975-26007212,
           26007293-26007503,26007631-26007755,26007895-26008023,
           26008540-26009326
          Length = 647

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 2   VISWIPLSELDYIEMRRHGKRLAVPF--VELTVTHASVLTILAISF 45
           V S+  +  + ++++   GK+ + P   + L +  A +LTI+ +SF
Sbjct: 245 VFSFYTVDAMVHLQVAMEGKKKSTPVLAIVLPIVFAGLLTIIIVSF 290


>07_03_1608 -
           28125301-28126063,28127030-28127139,28127222-28127716,
           28127797-28128000
          Length = 523

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 17  RRHGKRLAVPFVELTVTHAS 36
           RRHG R+A     L VTH S
Sbjct: 433 RRHGARIAGENASLVVTHTS 452


>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
            43196512-43196589,43196664-43197727,43197813-43198503,
            43198743-43199541,43200010-43200158,43200159-43200286,
            43200389-43200494,43200835-43200843,43201332-43201821,
            43201896-43202554,43203759-43203851,43204044-43204196,
            43205092-43205194,43205376-43205467,43206229-43206306,
            43206987-43207049,43207339-43207512
          Length = 1902

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 6    IPLSELDYIEMRRHGKRLAVPFVELTVTHASVLTILAISFERYYAICEPLRAGYVCTKTR 65
            +P SEL   ++  H +  A     L ++H  +L   +I+ ER+     PLR G  C K +
Sbjct: 1602 MPTSELLQTDLLAHDRVDAFIAWSLLLSHLQLLPPASITRERHI----PLRTGAPCGKKK 1657


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.333    0.143    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,243
Number of Sequences: 37544
Number of extensions: 76637
Number of successful extensions: 246
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 5
length of query: 91
length of database: 14,793,348
effective HSP length: 69
effective length of query: 22
effective length of database: 12,202,812
effective search space: 268461864
effective search space used: 268461864
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.5 bits)
S2: 52 (25.0 bits)