GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002243-TA|BGIBMGA002243-PA|IPR001977|Dephospho-CoA
kinase
         (203 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...   149   4e-37
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    31   0.12 
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    28   0.83 
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    28   0.83 
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    28   0.83 
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    25   7.8  

>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score =  149 bits (360), Expect = 4e-37
 Identities = 80/203 (39%), Positives = 122/203 (60%), Gaps = 3/203 (1%)

Query: 1   MFIVGLTGGLATGKSTVLSIFKE-HGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLF 59
           M I+GLTG +ATGKSTV   F+E + I +IDAD +ARKV+EP T   +++++ FG+ VL 
Sbjct: 1   MLILGLTGSIATGKSTVSREFQEKYHIKIIDADVLARKVVEPNTPCLIKIQKEFGNEVLH 60

Query: 60  PDGRVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLLFE 119
            DG +NR KLG+ VF D  KR  LN+I HP ++  M++     +  G++ ++++VPLLFE
Sbjct: 61  EDGTLNRAKLGQAVFQDAGKRSLLNSIIHPAVRLEMLKELLRCYVRGYSIVILDVPLLFE 120

Query: 120 TGKLLTFMHKIITVVCEDHQQLERLYKRN-DFSEIVARKRINSQMPLHEKVAKSHFVIDN 178
             K+     K I V C+   Q +RL  RN + +   A  R+ +QMPL  K   +  VI+N
Sbjct: 121 -AKMQFICWKTICVSCDKSIQKQRLLARNPELTAEDAENRVQAQMPLELKCQLADIVIEN 179

Query: 179 SGDLTNTRNQTESIIKVLRKSKF 201
           + DL        +++ ++  S F
Sbjct: 180 NSDLETLYENIHNVLPLITPSYF 202


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 54  GHGVLFPDGRVNRLKLGEIVFDDI-EKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVM 112
           G G  FP G       G+I FD+I   RR+ NA+        +++I  S F+TG ++  +
Sbjct: 86  GPGEGFPGGGFGFDPFGDI-FDNIFGGRRRQNAVRRGPSMEQIVQIHLSSFYTGGSF-TL 143

Query: 113 EVPL 116
           E+P+
Sbjct: 144 EIPV 147


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 5   GLTGGLATGKSTVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLFPDGRV 64
           GL+G L  G  +     +E  I  +D  E    +   G + W+ V      G L+  G  
Sbjct: 117 GLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDI-SAGLRHWICVTN---EGNLYGCGDG 172

Query: 65  NRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIV 111
            + +LG +V   + K   L  I H +     ++ +     TGH  ++
Sbjct: 173 RKGQLGPVVMKTVNKVSFLGRIEHAQAVVCGVQFSAVLQETGHVIVL 219


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 35  ARKVLEPGTKAWLEVKQYFGHG 56
           +RK LEP +  W++    FGHG
Sbjct: 347 SRKALEPVSLKWIDTASKFGHG 368


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 35  ARKVLEPGTKAWLEVKQYFGHG 56
           +RK LEP +  W++    FGHG
Sbjct: 347 SRKALEPVSLKWIDTASKFGHG 368


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 123 LLTFMHKIITVVCEDHQQLERLYKRNDFSEIVARKRINSQMPLHEKVAKSHFVIDN 178
           LL+ +H  +    ED+ +   L      +E+++ KR+++++P   + A +   +DN
Sbjct: 183 LLSVLHNNVAPEFEDNIRDACLLAEQAETELISNKRLSTKLPGRLQRALASIHVDN 238


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,698
Number of Sequences: 5004
Number of extensions: 34388
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 6
length of query: 203
length of database: 2,362,478
effective HSP length: 70
effective length of query: 133
effective length of database: 2,012,198
effective search space: 267622334
effective search space used: 267622334
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)