GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002243-TA|BGIBMGA002243-PA|IPR001977|Dephospho-CoA
kinase
         (203 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29670| Best HMM Match : CoaE (HMM E-Value=0)                       101   3e-22
SB_22012| Best HMM Match : ERO1 (HMM E-Value=0)                        29   2.7  
SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_29670| Best HMM Match : CoaE (HMM E-Value=0)
          Length = 315

 Score =  101 bits (243), Expect = 3e-22
 Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 1/189 (0%)

Query: 2   FIVGLTGGLATGKSTVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLFPD 61
           +++GLTGG+A+GKS++    +  G   I+ D +  K   PGTKA+ E+ + FG  V+  D
Sbjct: 108 YVIGLTGGIASGKSSICRRLEGLGAKTINCDLLGHKAYLPGTKAFDEIVKVFGQDVMSSD 167

Query: 62  GRVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLLFETG 121
           G +NR  LG IVF D  K   LN I  P I   +      +   G    V+E  +L E G
Sbjct: 168 GTINRKALGAIVFSDKSKLELLNNIVWPEIMRMVEDKILEYGDLGKKVCVIEAAVLLEAG 227

Query: 122 KLLTFMHKIITVVCEDHQQLERLYKRNDFSEIVARKRINSQMPLHEKVAKSHFVIDNSGD 181
                    ++++ ED + + R+  R+  SE  AR+R+ +QM   E+V +++ V+ +   
Sbjct: 228 WDRVMNEVWVSIIPED-EAILRMTTRDGMSEKQARQRLQAQMSNSERVNRANVVLSSLWV 286

Query: 182 LTNTRNQTE 190
              T+ Q E
Sbjct: 287 PDYTQKQVE 295


>SB_22012| Best HMM Match : ERO1 (HMM E-Value=0)
          Length = 400

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 76  DIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLLFE 119
           D+E   K+N   HP +   + R  F FF T + YI++E+   F+
Sbjct: 43  DVETVDKINNKIHPILDELVKRNYFKFFRTSN-YIMIEITFTFK 85


>SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 63  RVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVME 113
           R+ +   GE  +  I++R +   +   R Q     IAF F F+G  +I +E
Sbjct: 406 RMGKAHNGETSYGSIKRRAQPTPLNVQRTQGGHEGIAFYFIFSGSVFINVE 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.139    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,183,011
Number of Sequences: 59808
Number of extensions: 229095
Number of successful extensions: 728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 3
length of query: 203
length of database: 16,821,457
effective HSP length: 79
effective length of query: 124
effective length of database: 12,096,625
effective search space: 1499981500
effective search space used: 1499981500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)