GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002243-TA|BGIBMGA002243-PA|IPR001977|Dephospho-CoA
kinase
         (203 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-5|CAA81598.2|  237|Caenorhabditis elegans Hypothetical pr...   163   1e-40
AC024844-7|AAK29952.3|  461|Caenorhabditis elegans Hypothetical ...    84   6e-17
Z27079-10|CAD90180.1|  658|Caenorhabditis elegans Hypothetical p...    30   1.0  
Z27079-9|CAA81596.2|  660|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot...    29   3.1  
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot...    29   3.1  
Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z48585-2|CAA88479.1|  222|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z27079-5|CAA81598.2|  237|Caenorhabditis elegans Hypothetical
           protein T05G5.5 protein.
          Length = 237

 Score =  163 bits (395), Expect = 1e-40
 Identities = 85/202 (42%), Positives = 129/202 (63%), Gaps = 5/202 (2%)

Query: 1   MFIVGLTGGLATGKSTVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLFP 60
           M +VGL+GG+ATGKSTV S+F+ HG+ +IDAD+VAR+V+ PGT  +  +++ FG    F 
Sbjct: 11  MLVVGLSGGVATGKSTVSSVFRAHGVPIIDADQVARQVVVPGTSTYNRLRKEFG-DEYFD 69

Query: 61  D---GRVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLL 117
           D   G + R KLG+++F + EKR+ LN ITHP I+  M +   +   TG  YIV + PLL
Sbjct: 70  DEHGGVLRRDKLGKLIFSNPEKRKALNGITHPAIRWEMFKQFLTLLITGTKYIVFDTPLL 129

Query: 118 FETGKLLTFMHKIITVVCEDHQQLERLYKRNDFSEIVARKRINSQMPLHEKVAKSHFVID 177
           FE+G    ++   I V C+  Q++ER+  R++ S   A  RI++QM + EK  ++  VID
Sbjct: 130 FESG-YDKWIGTTIVVWCDFEQEVERMVTRDNISRADAESRIHAQMDIEEKKKRAKIVID 188

Query: 178 NSGDLTNTRNQTESIIKVLRKS 199
           N+G++   R + + +I  L KS
Sbjct: 189 NNGNIDELREKVKHVIAQLDKS 210


>AC024844-7|AAK29952.3|  461|Caenorhabditis elegans Hypothetical
           protein Y65B4A.8 protein.
          Length = 461

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 6/198 (3%)

Query: 2   FIVGLTGGLATGKSTVLSIFKE-HGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLFP 60
           +I+GL GG+A+GKS +    +E H   VID D++A    E G+    ++ ++FG  V+  
Sbjct: 266 YIIGLAGGIASGKSHIGKYLRETHNFDVIDCDKLAHTCYERGSSLNRKIGEHFGGDVVV- 324

Query: 61  DGRVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLLFET 120
           DG V+R KLG IVF D  K R+L+ +  P ++   + I      +    +V+E   L E 
Sbjct: 325 DGVVDRRKLGTIVFSDKVKLRELSELVWPEVKEKAMEIVKK---STAKVVVIEAAALIEA 381

Query: 121 GKLLTFMHKIITVVCEDHQQLERLYKRNDFSEIVARKRINSQMPLHEKVAKSHFVIDNSG 180
           G   T + +  TV     + + R+  R++ +E  A+ R++SQ+   E++  S+  + +  
Sbjct: 382 GWHKT-LAETWTVFVPADEAVRRVVARDNLTEDQAKDRMSSQISNKERLDNSNVALCSLW 440

Query: 181 DLTNTRNQTESIIKVLRK 198
               T  Q +  ++ L K
Sbjct: 441 AYEETHAQVDRAVEELMK 458


>Z27079-10|CAD90180.1|  658|Caenorhabditis elegans Hypothetical
           protein T05G5.9b protein.
          Length = 658

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 127 MHKIITVVCEDHQQLERLYKRNDFSEIVARKRINSQMPLHEKVAKSHFVIDNSGDLTNTR 186
           + + + V+  ++++L  L K  +FS     K ++S+    E   KSHFV++  G      
Sbjct: 240 LEEAVDVLKSENEKL--LAKNEEFSA----KLVSSEKEFAEFKKKSHFVLEKKG---KQE 290

Query: 187 NQTESIIKVLRKSKFT 202
           ++T   I+ L KSK T
Sbjct: 291 DETRKAIEKLEKSKVT 306


>Z27079-9|CAA81596.2|  660|Caenorhabditis elegans Hypothetical
           protein T05G5.9a protein.
          Length = 660

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 127 MHKIITVVCEDHQQLERLYKRNDFSEIVARKRINSQMPLHEKVAKSHFVIDNSGDLTNTR 186
           + + + V+  ++++L  L K  +FS     K ++S+    E   KSHFV++  G      
Sbjct: 242 LEEAVDVLKSENEKL--LAKNEEFSA----KLVSSEKEFAEFKKKSHFVLEKKG---KQE 292

Query: 187 NQTESIIKVLRKSKFT 202
           ++T   I+ L KSK T
Sbjct: 293 DETRKAIEKLEKSKVT 308


>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase
           protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 150 FSEIVARKRINSQMPLHEKVAKSHFVIDNSGDLTNTRNQTESIIKVLRKSKFTW 203
           FS++ A K    Q+PL   V  +++++D   +L  T+ +    I     +KF W
Sbjct: 938 FSQLEAMKSQEKQIPLQIDVQNAYYILDPDNNLGETQKRMVEYI-----NKFNW 986


>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein
           1 protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 150 FSEIVARKRINSQMPLHEKVAKSHFVIDNSGDLTNTRNQTESIIKVLRKSKFTW 203
           FS++ A K    Q+PL   V  +++++D   +L  T+ +    I     +KF W
Sbjct: 938 FSQLEAMKSQEKQIPLQIDVQNAYYILDPDNNLGETQKRMVEYI-----NKFNW 986


>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 156 RKRINSQMPLHEKVAKSHFVIDNSGDLTNTRNQTESIIKVLRK 198
           R R N  +P +  V   H +++N GDLTN  N  E ++++  K
Sbjct: 517 RLRTNEVVPYYTPV---HVIVNNPGDLTNDSN-VERLVELKEK 555


>Z48585-2|CAA88479.1|  222|Caenorhabditis elegans Hypothetical
          protein ZK673.2 protein.
          Length = 222

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 1  MFIVGLTGGLATGKSTVLSI----FKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHG 56
          M+ V L+G   +GK T+  +    F+  G     A +  R  +  GT+  +  + +   G
Sbjct: 1  MYRVLLSGAAGSGKGTIARMLVREFEPLGFNYFAAGDFIRDHIARGTEFGVRAQSFLNKG 60

Query: 57 VLFPDGRVNRLKLGEIV 73
             PD  +N   L E++
Sbjct: 61 EHVPDSILNGAILAEML 77


>AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical
           protein C52E2.5 protein.
          Length = 591

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 119 ETGKLLTFMHKIITVVCEDHQQL-ERLYKRNDFSEIVARKRIN 160
           ET K+LT +     ++C  ++ + E++ +  DF+E+V  +R++
Sbjct: 297 ETSKVLTSLPSKSAMLCLSNRLIMEKIVRHFDFAELVVLRRVS 339


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.139    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,711,115
Number of Sequences: 27539
Number of extensions: 186466
Number of successful extensions: 675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 9
length of query: 203
length of database: 12,573,161
effective HSP length: 78
effective length of query: 125
effective length of database: 10,425,119
effective search space: 1303139875
effective search space used: 1303139875
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)