GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002243-TA|BGIBMGA002243-PA|IPR001977|Dephospho-CoA
kinase
         (203 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 45  AWLEVKQYFGHGVLFPDGRVNRLKLGEIVFDDIE 78
           +WL+   ++ +  L  DG+ + L  GE++   +E
Sbjct: 166 SWLQEPSFYIYPSLQGDGKFHLLPTGELLVHSLE 199


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 45  AWLEVKQYFGHGVLFPDGRVNRLKLGEIVFDDIE 78
           +WL+   ++ +  L  DG+ + L  GE++   +E
Sbjct: 166 SWLQEPSFYIYPSLQGDGKFHLLPTGELLVHSLE 199


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 147 RNDFSEIVARKRINSQMPLHEKVAKS 172
           R++ S + A     + +P HEK+ +S
Sbjct: 124 RDELSHVRALAAGGNHLPFHEKLVES 149


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 37  KVLEPGTKAWLEVKQYFGHGVLFPDGRVNRLKLG 70
           K +EPG   W+ V +Y   G L  +    + KLG
Sbjct: 546 KQIEPGKYEWVRVGKYLS-GELRLNMSAIQFKLG 578


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,148
Number of Sequences: 429
Number of extensions: 2003
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 203
length of database: 140,377
effective HSP length: 55
effective length of query: 148
effective length of database: 116,782
effective search space: 17283736
effective search space used: 17283736
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)