GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002242-TA|BGIBMGA002242-PA|undefined
         (105 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0Y8F2 Cluster: Sulfate transporter; n=1; marine gamma ...    32   1.9  
UniRef50_O76564 Cluster: Putative uncharacterized protein; n=1; ...    32   2.6  
UniRef50_Q2LXF3 Cluster: Dolichyl-phosphate-mannose--protein man...    31   3.4  
UniRef50_A6EEH4 Cluster: Putative outer membrane protein; n=1; P...    31   4.5  
UniRef50_Q188X0 Cluster: Putative peptidase; n=2; Clostridium di...    31   5.9  
UniRef50_A1SVP0 Cluster: NAD-dependent epimerase/dehydratase pre...    30   7.8  
UniRef50_A6VJV9 Cluster: Tetratricopeptide TPR_2 repeat protein;...    30   7.8  

>UniRef50_A0Y8F2 Cluster: Sulfate transporter; n=1; marine gamma
           proteobacterium HTCC2143|Rep: Sulfate transporter -
           marine gamma proteobacterium HTCC2143
          Length = 574

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 35  LGNLVIACNIISLGYYSIQYNREWGWYTAGAGLLA-YFVAPPSGLRVMYPLSLALM 89
           LG  V + NI S  +Y +Q    W W TAG GL+   F+  P       P  L L+
Sbjct: 154 LGITVDSGNIFSQIFYFVQRIGSWHWLTAGIGLIGLVFMIYPKRFFPSMPSGLILL 209


>UniRef50_O76564 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 437

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 30  DDNAHLGNLVIACNIISLGYYSIQ-YNREWGWYTAGAGLLAYFVAPPSGLRVMYPLSLAL 88
           DDN++  N+  A NI  L YYS++ +N            L+YF+   S   +    S   
Sbjct: 354 DDNSYAANICSAANIPFLAYYSVEMFNIV---IFIPKTFLSYFLVSFSTFSISSSSSTHR 410

Query: 89  MEYCAYRLFHIHID 102
              C Y L HI  D
Sbjct: 411 FSICTYVLSHILCD 424


>UniRef50_Q2LXF3 Cluster: Dolichyl-phosphate-mannose--protein
           mannosyltransferase; n=1; Syntrophus aciditrophicus
           SB|Rep: Dolichyl-phosphate-mannose--protein
           mannosyltransferase - Syntrophus aciditrophicus (strain
           SB)
          Length = 528

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 51  SIQYNREWGWYTAGAGLLAYFVAPPSGLRVMYPLSLALMEYCAYR 95
           +++ NR WGWY AG  L +  ++  +GL +     LA++ +  +R
Sbjct: 166 ALRDNRAWGWYLAGFALGSAMLSKYTGLFLAVGTGLAVVAHRPWR 210


>UniRef50_A6EEH4 Cluster: Putative outer membrane protein; n=1;
           Pedobacter sp. BAL39|Rep: Putative outer membrane
           protein - Pedobacter sp. BAL39
          Length = 582

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 23  FALALAGD--DNAHLGNLVIACNIISLGYYSIQYNREWGWYTAG--AGLLAYFVAPPSGL 78
           +  AL  D  DN    N + + +I+ +GY S++Y  E   ++    +  L+Y ++P  G 
Sbjct: 248 YGYALVNDIGDNFTTRNELNSESILEIGY-SLKYKGEISVWSEDQVSNTLSYALSPVGGW 306

Query: 79  RVMYPLSLALMEY 91
           + +YP S  +M Y
Sbjct: 307 KTLYPSSWLIMAY 319


>UniRef50_Q188X0 Cluster: Putative peptidase; n=2; Clostridium
           difficile|Rep: Putative peptidase - Clostridium
           difficile (strain 630)
          Length = 336

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 19  GIVPFALALAGDDNAH-LGNLVIACNIISLGYYSIQYNREW 58
           G+VP  + + G  +A+ L NL   C I+SLG Y +    E+
Sbjct: 277 GVVPNPMVIGGGSDANILANLGYNCAILSLGMYDVHTVNEY 317


>UniRef50_A1SVP0 Cluster: NAD-dependent epimerase/dehydratase
           precursor; n=3; Gammaproteobacteria|Rep: NAD-dependent
           epimerase/dehydratase precursor - Psychromonas
           ingrahamii (strain 37)
          Length = 478

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 23  FALALAGDDNAHLGNLVIACNIISLGYYSIQYNREWGWYTAG-AGLLAYFVAPPSGLRVM 81
           F   L G     LG L    NI+  G Y     R W W+ AG  GLL +F   P+ L + 
Sbjct: 407 FLSLLMGMKAPGLGRLEF--NIVDKGAYRELDIRAW-WHPAGFLGLLYWFALMPAHLFIF 463

Query: 82  YPLSLALMEYCAYRL 96
             ++ A+++ C  ++
Sbjct: 464 KGMTKAIVKKCKTKM 478


>UniRef50_A6VJV9 Cluster: Tetratricopeptide TPR_2 repeat protein;
           n=1; Methanococcus maripaludis C7|Rep: Tetratricopeptide
           TPR_2 repeat protein - Methanococcus maripaludis C7
          Length = 589

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 7   GNQALSAIHLVSGIVPFALALAGD---DNAHLGNLVIACNIISLGYYSIQYNR 56
           G  A S  HL S I+P ++ + G+    +  L NL+I  ++ S+G  +  YN+
Sbjct: 312 GEGAFSDDHLTSVIIPDSVKIIGEGAFSHNRLTNLIIPDSVTSIGRGAFSYNQ 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.326    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,785,426
Number of Sequences: 1657284
Number of extensions: 4298359
Number of successful extensions: 11475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11472
Number of HSP's gapped (non-prelim): 7
length of query: 105
length of database: 575,637,011
effective HSP length: 82
effective length of query: 23
effective length of database: 439,739,723
effective search space: 10114013629
effective search space used: 10114013629
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 65 (30.3 bits)