GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002242-TA|BGIBMGA002242-PA|undefined
         (105 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    23   7.6  
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    23   7.6  

>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
          S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 38 LVIACNII-SLGYYSIQYNREWGWY 61
          ++ AC  + S GY   +YN  WGW+
Sbjct: 42 VIKACQSLDSRGYLKTRYN--WGWF 64


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
          S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 38 LVIACNII-SLGYYSIQYNREWGWY 61
          ++ AC  + S GY   +YN  WGW+
Sbjct: 42 VIKACQSLDSRGYLKTRYN--WGWF 64


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,644
Number of Sequences: 5004
Number of extensions: 16336
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 2,362,478
effective HSP length: 63
effective length of query: 42
effective length of database: 2,047,226
effective search space: 85983492
effective search space used: 85983492
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 48 (23.4 bits)