GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002242-TA|BGIBMGA002242-PA|undefined
         (105 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0755 - 5827893-5829764                                           26   5.0  
10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269...    26   6.6  

>01_01_0755 - 5827893-5829764
          Length = 623

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 22  PFALALAGDDNAHLGNLVIACNIISLGYYSIQYNREWGWYTAGAGLLAYFVAPPSGLRVM 81
           P  LA  G       ++ +A    S      Q++R +G + +GA LL    A P    ++
Sbjct: 106 PSCLAGGGGGGGGASSIALAVLEWSADCRGRQFDRIFGVWLSGAELLRSCTAEPRATGIV 165

Query: 82  YPLSLALMEYCA 93
           + +S  +  Y A
Sbjct: 166 WSVSRDVTRYAA 177


>10_01_0256 -
           2688172-2688786,2690779-2690857,2691567-2691652,
           2693046-2693113,2695175-2695244,2696191-2696320,
           2696924-2697906
          Length = 676

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 2   ADLYRGNQALSAIHLVSGIVPFALALAGDDNAH 34
           AD    +Q L  I L   ++P+A+A AGD   H
Sbjct: 410 ADCSDKSQKLGIIPLCPLLLPYAVAAAGDQRDH 442


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,532
Number of Sequences: 37544
Number of extensions: 119785
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 14,793,348
effective HSP length: 72
effective length of query: 33
effective length of database: 12,090,180
effective search space: 398975940
effective search space used: 398975940
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)