GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002242-TA|BGIBMGA002242-PA|undefined
         (105 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    32   0.091
AL117207-12|CAB60403.3|  228|Caenorhabditis elegans Hypothetical...    28   1.1  
U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid...    28   1.5  
U80452-3|AAB37861.1|  339|Caenorhabditis elegans Hypothetical pr...    27   2.0  
U97592-4|AAB52872.1|  450|Caenorhabditis elegans Hypothetical pr...    27   2.6  
U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled rel...    26   6.0  
U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna ...    25   7.9  

>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 30  DDNAHLGNLVIACNIISLGYYSIQ-YNREWGWYTAGAGLLAYFVAPPSGLRVMYPLSLAL 88
           DDN++  N+  A NI  L YYS++ +N            L+YF+   S   +    S   
Sbjct: 354 DDNSYAANICSAANIPFLAYYSVEMFNIV---IFIPKTFLSYFLVSFSTFSISSSSSTHR 410

Query: 89  MEYCAYRLFHIHID 102
              C Y L HI  D
Sbjct: 411 FSICTYVLSHILCD 424


>AL117207-12|CAB60403.3|  228|Caenorhabditis elegans Hypothetical
           protein Y60A3A.19 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 40  IACNIISLGYYSIQYNREWGWYTA---GAGLLAYFVAPPSGLRVMYPLSLALMEYC 92
           I C ++ L Y+ ++ N    W        G + YF+A   G  V Y   L ++ YC
Sbjct: 103 IRCVLLPLPYFRMKLNIVVSWIITIWFCGGFMVYFIARALGGDVGYSQVLGIVGYC 158


>U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid
           phosphatase protein1 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 18  SGIVPFALALAGDDNAHLGNLVIAC 42
           +G VP A+    DD  HLGN+   C
Sbjct: 143 AGYVPIAVHTVDDDTDHLGNMESTC 167


>U80452-3|AAB37861.1|  339|Caenorhabditis elegans Hypothetical
          protein C16C8.17 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 7/26 (26%), Positives = 19/26 (73%)

Query: 29 GDDNAHLGNLVIACNIISLGYYSIQY 54
          G+DN ++G L+ A  ++++  Y++++
Sbjct: 53 GEDNEYIGKLIEAAKMVNINVYNVEH 78


>U97592-4|AAB52872.1|  450|Caenorhabditis elegans Hypothetical
           protein C14A11.5 protein.
          Length = 450

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 4   LYRGNQALSAIHLVSGIVPFALALAGDDNAHLGNLVIACN 43
           L  GN+   A+H    +V +A  +  D N H+G++ IA N
Sbjct: 65  LLSGNK--DALHDYEKLVLYAKMIENDQNEHVGDVSIAAN 102


>U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled
           related protein 2 protein.
          Length = 654

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 26  ALAGDDNAHLGNLVIACNIISLGYYS 51
           A+A D    +G++++  N ISLG YS
Sbjct: 398 AVALDGRIDIGDMIVGINEISLGNYS 423


>U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna
           synthetase protein1, isoform a protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 31  DNAHLGNLVIACNIISLGYYSIQYNREWGWYTAGAG 66
           ++ H+GNL+I  N+I    + I+     G +TA  G
Sbjct: 68  ESLHIGNLLILVNLIRAQQFGIRPIALIGEFTASIG 103


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,463
Number of Sequences: 27539
Number of extensions: 85463
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 7
length of query: 105
length of database: 12,573,161
effective HSP length: 71
effective length of query: 34
effective length of database: 10,617,892
effective search space: 361008328
effective search space used: 361008328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)