GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002241-TA|BGIBMGA002241-PA|IPR000194|ATPase, F1/V1/A1
complex, alpha/beta subunit, nucleotide-binding, IPR000793|ATPase,
F1/V1/A1 complex, alpha/beta subunit, C-terminal, IPR004100|ATPase,
F1/V1/A1 complex, alpha/beta subunit, N-terminal, IPR005723|ATPase, V1
complex, subunit B
         (494 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   3.7  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 87  GIDAKNTLCEFTGDILR 103
           G+   N +CEFTGD  R
Sbjct: 292 GVMGFNEICEFTGDWTR 308


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,537
Number of Sequences: 317
Number of extensions: 4770
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 1
length of query: 494
length of database: 114,650
effective HSP length: 59
effective length of query: 435
effective length of database: 95,947
effective search space: 41736945
effective search space used: 41736945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)