Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002241-TA|BGIBMGA002241-PA|IPR000194|ATPase, F1/V1/A1
complex, alpha/beta subunit, nucleotide-binding, IPR000793|ATPase,
F1/V1/A1 complex, alpha/beta subunit, C-terminal, IPR004100|ATPase,
F1/V1/A1 complex, alpha/beta subunit, N-terminal, IPR005723|ATPase, V1
complex, subunit B
(494 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 878 0.0
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 812 0.0
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 122 4e-28
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 111 1e-24
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 111 1e-24
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 93 5e-19
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 91 2e-18
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 29 5.7
DQ010405-1|AAY32916.1| 210|Caenorhabditis elegans methyl-bindin... 29 7.5
AL132860-22|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 7.5
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 7.5
AF003137-10|AAT48622.1| 210|Caenorhabditis elegans Hypothetical... 29 7.5
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 878 bits (2172), Expect = 0.0
Identities = 419/478 (87%), Positives = 452/478 (94%), Gaps = 5/478 (1%)
Query: 14 HVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVS 73
H A+ R++ + PRL Y+TV GVNGPLVIL++VKFP+FSEIV++ L DG+ RSGQVLE+S
Sbjct: 13 HKSAIIRNYNTNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEIS 72
Query: 74 GSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDF 133
+KAVVQVFEGTSGIDAKNT+CEFTGDILRTPVSEDMLGR+FNGSGKPIDKGPP+LAEDF
Sbjct: 73 KNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDF 132
Query: 134 LDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 193
LDI GQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSA+GLPHNEIAAQI RQ
Sbjct: 133 LDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIAAQIVRQG 192
Query: 194 GLVKVPGKSVLDDHED-NFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPT 252
GLV++P + HE NFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPT
Sbjct: 193 GLVQLPDRP----HEQTNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPT 248
Query: 253 IERIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 312
IERIITPR+ALT+AEFLAYQC+KHVLV+LTDMSSYAEALREVSAAREEVPGRRGFPGYMY
Sbjct: 249 IERIITPRIALTSAEFLAYQCKKHVLVVLTDMSSYAEALREVSAAREEVPGRRGFPGYMY 308
Query: 313 TDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQI 372
TDLATIYERAGRVEGR+GSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNR I
Sbjct: 309 TDLATIYERAGRVEGRDGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLI 368
Query: 373 YPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDD 432
YPP+NVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEEAL+ DD
Sbjct: 369 YPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSDD 428
Query: 433 LLYLEFLTKFEKNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASTLAEFYPR 490
LLYLEFLTKFEKNFITQG+YENR+VFESLDIGWQLLRIFP+EMLKRIP STL ++YPR
Sbjct: 429 LLYLEFLTKFEKNFITQGHYENRSVFESLDIGWQLLRIFPREMLKRIPESTLEKYYPR 486
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 812 bits (2008), Expect = 0.0
Identities = 383/477 (80%), Positives = 433/477 (90%), Gaps = 3/477 (0%)
Query: 14 HVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVS 73
H A+ +++ ++P+LTY+TV GVNGPLVI+ VKFP F+EIV++ L +G +R GQVLE S
Sbjct: 25 HRTALIQNYSTKPKLTYQTVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESS 84
Query: 74 GSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDF 133
+KAVVQVFEGT+G+DAK T CEFTGDI R+PVS DMLGR+FNGSGKPIDKGPP+L ED+
Sbjct: 85 KNKAVVQVFEGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDY 144
Query: 134 LDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 193
LDI GQPINP++RIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI RQ
Sbjct: 145 LDINGQPINPFNRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIVRQG 204
Query: 194 GLVKVPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTI 253
GLV++PG++ + NFAIVFAAMGVNMETARFFKQDFEE GSM+NVCLFLNLANDPTI
Sbjct: 205 GLVQLPGRN---NETVNFAIVFAAMGVNMETARFFKQDFEECGSMDNVCLFLNLANDPTI 261
Query: 254 ERIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYT 313
ERIITPR+ALTAAEF AY C KHVLV+LTDMSSYAEALRE+SAAREEVPGRRGFPGYMYT
Sbjct: 262 ERIITPRIALTAAEFFAYHCGKHVLVVLTDMSSYAEALREISAAREEVPGRRGFPGYMYT 321
Query: 314 DLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIY 373
DLATIYERAGRV+GR GSITQIPILTMPN+DITHPIPDLTGYITEGQIY+D+QLH R IY
Sbjct: 322 DLATIYERAGRVKGREGSITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIY 381
Query: 374 PPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDL 433
PP++VLPSLSRLMKSA+GEGMTR+DHSD+SNQLYACYA+GKDVQAMKAVVG EAL+PDDL
Sbjct: 382 PPIDVLPSLSRLMKSAVGEGMTREDHSDLSNQLYACYAMGKDVQAMKAVVGVEALSPDDL 441
Query: 434 LYLEFLTKFEKNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASTLAEFYPR 490
LYLEFL KFEKNFI QG YENRT+ ESL+IGW+LLRIFP+EMLKRIP + L ++Y R
Sbjct: 442 LYLEFLAKFEKNFIAQGRYENRTIVESLNIGWELLRIFPREMLKRIPETLLEKYYKR 498
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 122 bits (295), Expect = 4e-28
Identities = 102/391 (26%), Positives = 180/391 (46%), Gaps = 30/391 (7%)
Query: 69 VLEVS---GSKAVVQV-FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 124
+LEVS G V + +GT G+ + + TGD ++ PV + LGR+ N G+PID+
Sbjct: 105 ILEVSQHLGDNVVRCIAMDGTEGLVRGQPVAD-TGDPIKIPVGPETLGRIMNVIGEPIDE 163
Query: 125 GPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 184
PI +++F I + +E++ TGI +D++ A+G KI +F AG+
Sbjct: 164 RGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 223
Query: 185 IAAQICRQAGLVKVPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSME----- 239
+ ++ + K G ++ VFA +G + E G ++
Sbjct: 224 LIMELINN--VAKAHG---------GYS-VFAGVGERTREGNDLYHEMIEGGVIDLKGKN 271
Query: 240 -NVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAR 298
V L N+P R LT AE+ Q + VL+ + ++ + +A EVSA
Sbjct: 272 SKVSLVYGQMNEPPGARARVCLTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALL 331
Query: 299 EEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITE 358
+P G+ + TD+ ++ ER + GSIT + + +P DD+T P P T +
Sbjct: 332 GRIPSAVGYQPTLATDMGSMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLD 389
Query: 359 GQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQA 418
+ R + IYP V+ L S SR+M + ++H D++ + K +Q
Sbjct: 390 ATTVLSRGIAELAIYPAVDPLDSTSRIM----DPNVVGQNHYDIARGVQKILQDYKSLQD 445
Query: 419 MKAVVGEEALTPDDLLYLEFLTKFEKNFITQ 449
+ A++G + L+ +D L + K ++ F++Q
Sbjct: 446 IIAILGMDELSEEDKLTVSRARKIQR-FLSQ 475
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 111 bits (266), Expect = 1e-24
Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 13/332 (3%)
Query: 67 GQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KG 125
G + + V VF G + + + + TG I+ PV + +LGRV + G PID KG
Sbjct: 62 GMAMNLDVDNVGVVVF-GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKG 120
Query: 126 PPILAE-DFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 184
P A ++++ I P R+ E + TG+ A+D + I RGQ+ I
Sbjct: 121 PIANARRSRVEVKAPGIIP--RLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTA 178
Query: 185 IAAQICRQAGLVKVPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLF 244
IA G DD + F I + A+G T + + G+M+ +
Sbjct: 179 IAIDTIINQKRFNDAG----DDKKKLFCI-YVAVGQKRSTVAQIVKRLTDAGAMDYTIVV 233
Query: 245 LNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGR 304
A+D + + P E KH L+I D+S A A R++S PGR
Sbjct: 234 SATASDAAPLQFLAPYSGCAMGEHFRDN-GKHALIIFDDLSKQAVAYRQMSLLLRRPPGR 292
Query: 305 RGFPGYMYTDLATIYERAGRVEGR--NGSITQIPILTMPNDDITHPIPDLTGYITEGQIY 362
+PG ++ + + ERA ++ GS+T +P++ D++ IP IT+GQI+
Sbjct: 293 EAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIF 352
Query: 363 VDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGM 394
++ +L + + P +NV S+SR+ +A + M
Sbjct: 353 LETELFYKGVRPAINVGLSVSRVGSAAQTKAM 384
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 111 bits (266), Expect = 1e-24
Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 13/332 (3%)
Query: 67 GQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KG 125
G + + V VF G + + + + TG I+ PV + +LGRV + G PID KG
Sbjct: 89 GMAMNLDVDNVGVVVF-GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKG 147
Query: 126 PPILAE-DFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 184
P A ++++ I P R+ E + TG+ A+D + I RGQ+ I
Sbjct: 148 PIANARRSRVEVKAPGIIP--RLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTA 205
Query: 185 IAAQICRQAGLVKVPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLF 244
IA G DD + F I + A+G T + + G+M+ +
Sbjct: 206 IAIDTIINQKRFNDAG----DDKKKLFCI-YVAVGQKRSTVAQIVKRLTDAGAMDYTIVV 260
Query: 245 LNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGR 304
A+D + + P E KH L+I D+S A A R++S PGR
Sbjct: 261 SATASDAAPLQFLAPYSGCAMGEHFRDN-GKHALIIFDDLSKQAVAYRQMSLLLRRPPGR 319
Query: 305 RGFPGYMYTDLATIYERAGRVEGR--NGSITQIPILTMPNDDITHPIPDLTGYITEGQIY 362
+PG ++ + + ERA ++ GS+T +P++ D++ IP IT+GQI+
Sbjct: 320 EAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIF 379
Query: 363 VDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGM 394
++ +L + + P +NV S+SR+ +A + M
Sbjct: 380 LETELFYKGVRPAINVGLSVSRVGSAAQTKAM 411
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 92.7 bits (220), Expect = 5e-19
Identities = 87/333 (26%), Positives = 148/333 (44%), Gaps = 16/333 (4%)
Query: 66 SGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-K 124
+G+VL + + +V+ G I A+ + EF I ++ D+ G PID K
Sbjct: 56 TGKVLSIGDG--IARVY-GLKNIQAEE-MVEFDSGIKGMAMNLDVDNVGVVVLGNPIDGK 111
Query: 125 GPPILAE-DFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHN 183
GP A ++++ I P R+ E + TG+ A+D + I RGQ+ I
Sbjct: 112 GPIANARRSRVEVKAPGIIP--RLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKT 169
Query: 184 EIAAQICRQAGLVKVPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCL 243
IA G DD + F I + A+G T + + G+M+ +
Sbjct: 170 AIAIDTIINQKRFNDAG----DDKKKLFCI-YVAVGQKRSTVAQIVKRLTDAGAMDYTIV 224
Query: 244 FLNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPG 303
A+D + + P E KH L+I D+S A A R++S PG
Sbjct: 225 VSATASDAAPLQFLAPYSGCAMGEHFRDN-GKHALIIFDDLSKQAVAYRQMSLLLRRPPG 283
Query: 304 RRGFPGYMYTDLATIYERAGRVEGR--NGSITQIPILTMPNDDITHPIPDLTGYITEGQI 361
R +PG ++ + + ERA ++ GS+T +P++ D++ IP IT+GQI
Sbjct: 284 REAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 343
Query: 362 YVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGM 394
+++ +L + + P +NV S+SR+ +A + M
Sbjct: 344 FLETELFYKGVRPAINVGLSVSRVGSAAQTKAM 376
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 91.1 bits (216), Expect = 2e-18
Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 29/289 (10%)
Query: 190 CRQAGLVKVPG-----KSV----LDDHEDNFAIVFAAMGVNMETARFFKQDFEE------ 234
C Q G +PG K+V L + ++ AI++ G +DF E
Sbjct: 229 CVQGGTTAIPGAFGCGKTVISQSLSKYSNSDAIIYVGCGERGNEMSEVLRDFPELTMEVE 288
Query: 235 ---NGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEAL 291
M+ L N +N P R + +T AE+ +V ++ S +AEAL
Sbjct: 289 GVTTSIMKRTALVANTSNMPVAAREASIYTGITLAEYFR-DMGLNVAMMADSTSRWAEAL 347
Query: 292 REVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE-----GRNGSITQIPILTMPNDDIT 346
RE+S E+P G+P Y+ LA+ YERAGRV+ R GS+T + ++ P D
Sbjct: 348 REISGRLGEMPADSGYPAYLAARLASFYERAGRVKCLGSPEREGSVTIVGAVSPPGGDFA 407
Query: 347 HPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQL 406
P+ T I + +D++L R+ +P +N L S S M++ E K++ + +
Sbjct: 408 DPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSEYMRAL--EEFYEKNYPEFVSLR 465
Query: 407 YACYAI---GKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFITQGNY 452
C I +D+ + +VG+ +L D + LE + +F+ Q Y
Sbjct: 466 TKCKEILQEEEDLSEIVQLVGKASLAESDKVTLEVAKIIKDDFLQQNGY 514
Score = 44.8 bits (101), Expect = 1e-04
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 29 TYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGI 88
+Y V GV+GP+V +++ E+V++ + G+++ + G A +QV+E TSG+
Sbjct: 6 SYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELV---GEIIRLEGDYATIQVYEETSGV 62
Query: 89 DAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPI 122
+ + TG L + ++G +F+G +P+
Sbjct: 63 TIGDPVLR-TGKPLSVELGPGIMGSIFDGIQRPL 95
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 318 IYERAGRVEGRNGSITQIPILTMP 341
IYE VEG NGS T IP +T P
Sbjct: 327 IYETVSLVEGLNGSPTPIPTVTDP 350
>DQ010405-1|AAY32916.1| 210|Caenorhabditis elegans methyl-binding
protein-2 protein.
Length = 210
Score = 29.1 bits (62), Expect = 7.5
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 401 DVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFITQGNYENRTVFES 460
DV Y+ +I K + +K G A TP++ + + + F+T G + +
Sbjct: 105 DVKKAEYSYESI-KKISLIKP--GVSAFTPEEAM-TTVIQQMNNGFMTNGTFGQAANKDK 160
Query: 461 LDIGWQLLRIFPKEMLKRIPASTLAE 486
LD+ + L + + + +RIP + + E
Sbjct: 161 LDVNFIGLALHDQPLCERIPIAHIVE 186
>AL132860-22|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.1 bits (62), Expect = 7.5
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 217 AMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKH 276
A+ V + F EN S + L P + ++TP + L + L Q ++H
Sbjct: 51 AISVTSVSGHMMNFQFHENMSNWQTASMVELFRAP-VRHVVTPEMKL-IEQTLREQAQRH 108
Query: 277 -VLVILTDMSSYAEAL 291
+LV+ TD EA+
Sbjct: 109 DILVVWTDCDREGEAI 124
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 29.1 bits (62), Expect = 7.5
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 217 AMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKH 276
A+ V + F EN S + L P + ++TP + L + L Q ++H
Sbjct: 51 AISVTSVSGHMMNFQFHENMSNWQTASMVELFRAP-VRHVVTPEMKL-IEQTLREQAQRH 108
Query: 277 -VLVILTDMSSYAEAL 291
+LV+ TD EA+
Sbjct: 109 DILVVWTDCDREGEAI 124
>AF003137-10|AAT48622.1| 210|Caenorhabditis elegans Hypothetical
protein C27A12.10 protein.
Length = 210
Score = 29.1 bits (62), Expect = 7.5
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 401 DVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFITQGNYENRTVFES 460
DV Y+ +I K + +K G A TP++ + + + F+T G + +
Sbjct: 105 DVKKAEYSYESI-KKISLIKP--GVSAFTPEEAM-TTVIQQMNNGFMTNGTFGQAANKDK 160
Query: 461 LDIGWQLLRIFPKEMLKRIPASTLAE 486
LD+ + L + + + +RIP + + E
Sbjct: 161 LDVNFIGLALHDQPLCERIPIAHIVE 186
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,845,538
Number of Sequences: 27539
Number of extensions: 514509
Number of successful extensions: 1083
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 14
length of query: 494
length of database: 12,573,161
effective HSP length: 84
effective length of query: 410
effective length of database: 10,259,885
effective search space: 4206552850
effective search space used: 4206552850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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