GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002241-TA|BGIBMGA002241-PA|IPR000194|ATPase, F1/V1/A1
complex, alpha/beta subunit, nucleotide-binding, IPR000793|ATPase,
F1/V1/A1 complex, alpha/beta subunit, C-terminal, IPR004100|ATPase,
F1/V1/A1 complex, alpha/beta subunit, N-terminal, IPR005723|ATPase, V1
complex, subunit B
         (494 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    27   0.36 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 27.1 bits (57), Expect = 0.36
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 135 DIQGQPINPWSRIYPEEMIQTGI--SAIDVMNSIARGQKIPI 174
           D +  P+ P + ++P++ + +GI   A +  N +  G ++PI
Sbjct: 138 DTKDLPVPPLTEVFPDKYMDSGIFSRAREEANVVPEGARVPI 179


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 251 PTIERIITPRLALTAAEFLAYQC 273
           PTI++    +L + A EF   QC
Sbjct: 583 PTIQQFSFTKLPMNAGEFANLQC 605


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,731
Number of Sequences: 429
Number of extensions: 5867
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 494
length of database: 140,377
effective HSP length: 60
effective length of query: 434
effective length of database: 114,637
effective search space: 49752458
effective search space used: 49752458
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)