GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002240-TA|BGIBMGA002240-PA|IPR008042|Retrotransposon,
Pao
         (83 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   1.0  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   1.0  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    20   3.1  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     20   4.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   5.3  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    19   7.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   9.3  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    19   9.3  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
          optomotor-blind-like protein protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 1.0
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 2  FMQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHGY 57
          F    W+     D E+P+ +     +  T  + MQ +     L + NN+  + HG+
Sbjct: 35 FHNSRWMVAGKADPEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNNIS-DKHGF 89


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
          optomotor-blind-like protein protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 1.0
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 2  FMQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHGY 57
          F    W+     D E+P+ +     +  T  + MQ +     L + NN+  + HG+
Sbjct: 35 FHNSRWMVAGKADPEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNNIS-DKHGF 89


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 2   FMQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPR 42
           + +K    GLD D E PE    + +N++T    ++    P+
Sbjct: 132 YFEKYGFNGLDIDWEYPE--AKDKENFITLLREIKEAFQPK 170


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 27  NYLTNFEHMQAIQLP 41
           N+  +  HMQ +QLP
Sbjct: 106 NHSPHLSHMQFMQLP 120


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 5/10 (50%), Positives = 9/10 (90%)

Query: 43   WLGIANNVKI 52
            W+ ++NNVK+
Sbjct: 1536 WIQVSNNVKL 1545


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 10  GLDWDSELPEDLKT 23
           GLD D E P+D  T
Sbjct: 139 GLDVDWEYPQDKAT 152


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 18.6 bits (36), Expect = 9.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 2    FMQKLWLAGLDWDSELPE 19
            F++K    GLD D E P+
Sbjct: 1506 FLEKWNFDGLDLDWEYPK 1523


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 18.6 bits (36), Expect = 9.3
 Identities = 5/10 (50%), Positives = 7/10 (70%)

Query: 24  EWQNYLTNFE 33
           +W NY+  FE
Sbjct: 405 KWLNYINQFE 414


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,922
Number of Sequences: 317
Number of extensions: 586
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 83
length of database: 114,650
effective HSP length: 46
effective length of query: 37
effective length of database: 100,068
effective search space:  3702516
effective search space used:  3702516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)