GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002240-TA|BGIBMGA002240-PA|IPR008042|Retrotransposon,
Pao
         (83 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   1.0  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    25   1.4  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    24   2.4  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    23   5.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   5.6  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    22   9.7  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    22   9.7  

>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
          L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 14 DSELPEDLKTEWQN----YLTNFEHMQAIQLPRWLG 45
          D+ LP+ L   +++     L+  EH Q  +LPRW+G
Sbjct: 58 DTILPDVLAASYRHDIDTALSTDEHTQKDRLPRWIG 93


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 41  PRWLGIANNVKIELHGYCDAS 61
           P +  +  N  IEL GYCD S
Sbjct: 83  PLYRDLQTNTPIELMGYCDQS 103


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 4   QKLWLAGLDWDSELPEDLKTEWQNYLT 30
           + LW   +DW     + LK E Q ++T
Sbjct: 605 ESLWALPIDWSKVTEDLLKEEMQAFVT 631


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 14  DSELPEDLKTEWQNYLTNFEH 34
           D++ PED+KT+  N     +H
Sbjct: 220 DTDQPEDVKTQTNNASNTLKH 240


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 22   KTEWQNYLTNFEHMQAIQLP 41
            K  W NYLTN++    ++ P
Sbjct: 4688 KKFWNNYLTNYKPYTFLEKP 4707


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 20  DLKTEWQNYLTNFEHMQA--IQLPR 42
           D K EW N +  F ++ A  ++ PR
Sbjct: 511 DFKAEWDNVMLGFRYVFASYLRFPR 535


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 10  GLDWDSELPEDLKTEWQNYLTNF 32
           G+D D+ L E  K +W  Y   F
Sbjct: 702 GVDIDTLLQEPKKPDWTKYSIEF 724


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,721
Number of Sequences: 5004
Number of extensions: 11619
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 7
length of query: 83
length of database: 2,362,478
effective HSP length: 60
effective length of query: 23
effective length of database: 2,062,238
effective search space: 47431474
effective search space used: 47431474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)