Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002240-TA|BGIBMGA002240-PA|IPR008042|Retrotransposon,
Pao
(83 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0866 + 22006822-22006899,22006997-22007080,22007621-220077... 28 0.82
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302... 28 1.1
10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175... 28 1.1
10_01_0141 - 1686827-1687063,1687160-1687315,1688046-1688974,168... 27 1.9
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 26 4.3
04_04_0244 - 23869222-23870322,23871456-23871521 25 5.7
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041... 25 5.7
10_01_0139 - 1660382-1660729,1660826-1661008,1662122-1663057,166... 25 7.6
07_03_1186 + 24660874-24661218,24661310-24661915 25 7.6
>08_02_0866 +
22006822-22006899,22006997-22007080,22007621-22007719,
22007864-22007908,22008170-22008265,22009150-22009227,
22009864-22009949,22010038-22010104,22010192-22010254,
22010332-22010433,22010559-22010663,22010748-22010840,
22011380-22011468,22012049-22012268,22012816-22012899,
22013221-22013337,22013399-22013473,22013589-22013675,
22013766-22013828,22014833-22014949,22015231-22015323,
22015794-22015919,22015992-22016092,22016917-22016996,
22017023-22017093,22017200-22017256,22017430-22017573
Length = 839
Score = 28.3 bits (60), Expect = 0.82
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 13 WDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHGYCD 59
W SEL +K+E + L FE +Q++ L +A K LH CD
Sbjct: 91 WFSELESAMKSEVDDTLNLFEELQSLH----LSVATKTK-TLHDACD 132
>11_01_0401 -
3020606-3020932,3021480-3021626,3021711-3021878,
3021960-3022218,3024469-3024522,3025200-3025375
Length = 376
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 12 DWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHGYCDASC 62
+W +PE L+ +W +++ + W N VK+ L +C C
Sbjct: 301 NWLRAVPEKLQGKWNSFIQ-------WKTDNWTPFTNTVKVALQSFCTGCC 344
>10_01_0152 -
1754113-1754286,1754396-1754551,1755273-1756194,
1756364-1756414,1757540-1757946,1758918-1759067,
1759178-1759333,1760175-1761041
Length = 960
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 12 DWDSELPEDLKTEWQNYLTNFEHMQAIQLP-RWLGIANNV 50
DW S++P+D+ ++LT + +Q L RWL + +V
Sbjct: 583 DWFSDVPDDVILNIMSFLTTRQAVQTCVLSRRWLNLWRSV 622
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 12 DWDSELPEDLKTEWQNYLTNFEHMQAIQLP-RWLGIANNV 50
DW S++P+D+ ++LT + +Q L RW + +V
Sbjct: 21 DWFSDVPDDIILNIMSFLTTRQAVQTCVLSRRWRNLWRSV 60
>10_01_0141 -
1686827-1687063,1687160-1687315,1688046-1688974,
1689595-1689640,1689914-1689932,1690751-1690962,
1691063-1691218,1692240-1693184,1693448-1693597
Length = 949
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 9 AGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLP-RWLGIANNV 50
AG+DW S+LP+++ ++L + +Q L RW + V
Sbjct: 546 AGMDWISDLPDEILHRIMSFLNARQAVQTCVLSRRWRNLWRTV 588
>12_02_0761 - 22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 34 HMQAIQLPRWLGIANN-VKIEL 54
H ++LP+W+G NN VK++L
Sbjct: 1144 HGNLVELPKWIGKLNNLVKLKL 1165
>04_04_0244 - 23869222-23870322,23871456-23871521
Length = 388
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 11 LDWDSELPEDLKTEWQNYLTNFE 33
L W ++PE L + +NYL +FE
Sbjct: 230 LRWCDDIPEILHLQLRNYLYSFE 252
>02_04_0458 -
23102262-23102377,23102505-23102661,23103094-23104140,
23104357-23104500,23105389-23105457
Length = 510
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 11 LDWDSELPEDLKTEWQNYLTNFE 33
L W ++PE L + +NYL +FE
Sbjct: 279 LRWCDDIPEVLHLQLRNYLYSFE 301
>10_01_0139 -
1660382-1660729,1660826-1661008,1662122-1663057,
1667929-1668084,1669081-1669971
Length = 837
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 9 AGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPR 42
AG+DW S LP+++ ++L + +Q L R
Sbjct: 20 AGMDWISGLPDEILHHIMSFLNARQAVQTCVLSR 53
>07_03_1186 + 24660874-24661218,24661310-24661915
Length = 316
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 14 DSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGI 46
D EL E++ TE + L F + L RWL +
Sbjct: 16 DGELLEEMVTEGYDLLGKFNWADHLPLLRWLDL 48
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.135 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,038
Number of Sequences: 37544
Number of extensions: 70852
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 11
length of query: 83
length of database: 14,793,348
effective HSP length: 62
effective length of query: 21
effective length of database: 12,465,620
effective search space: 261778020
effective search space used: 261778020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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