GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002240-TA|BGIBMGA002240-PA|IPR008042|Retrotransposon,
Pao
         (83 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    57   7e-11
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   0.46 
AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione S-tran...    23   1.9  
Y13592-1|CAA73920.1|  136|Anopheles gambiae voltage-gated sodium...    21   5.7  
AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.     21   7.6  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    21   7.6  
AF457565-1|AAL68795.1|  391|Anopheles gambiae TRIO protein protein.    21   7.6  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 57.2 bits (132), Expect = 7e-11
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 2    FMQKLWLAGLD------WDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELH 55
            FMQ++W    +      WD E+P+ ++ EW+ +     H+Q +Q+PR + I     I++H
Sbjct: 988  FMQRVWSLKKENGDSYGWDEEIPQQMRQEWEVFERQLTHLQEVQVPRCVTIVGARNIQIH 1047

Query: 56   GYCDAS 61
            G+CDAS
Sbjct: 1048 GFCDAS 1053


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 0.46
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 11   LDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNV--KIELHG 56
            +DW   + EDL+ + Q YL +      I + R   +  +   +IELHG
Sbjct: 3266 MDWFGCMLEDLREDVQEYLKHGHGNGNILMERLKALHTDALEEIELHG 3313



 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 6    LWLAGLDWDSELPEDLKTEWQNYLT 30
            +WL G+     L ED+K++ +  LT
Sbjct: 1645 VWLEGVVVQETLLEDVKSDAERKLT 1669


>AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione
           S-transferase u2 protein.
          Length = 222

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 15  SELPEDLKTEWQNYLTNFEH 34
           +E+ +++KT  Q  LT+ EH
Sbjct: 124 TEISDEMKTTTQKALTDLEH 143


>Y13592-1|CAA73920.1|  136|Anopheles gambiae voltage-gated sodium
          channel protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 26 QNYLTNFEHMQAIQLPRW 43
          +NY+ N +      LPRW
Sbjct: 39 KNYVDNVDRFPDHDLPRW 56


>AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein
          protein.
          Length = 260

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 5  KLWLAGLDWDSELPEDLKTEWQNY 28
          KL LA   WD ++ E  +   +NY
Sbjct: 19 KLILAPYGWDEQMNEAAREFLKNY 42


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 12   DWDSELPEDLKTEWQNYLTNFEHMQAIQLP 41
            D D E  + LK  W     NF  + +  LP
Sbjct: 1019 DLDEEKKKKLKVAWSEVDENFGSIFSTLLP 1048


>AF457565-1|AAL68795.1|  391|Anopheles gambiae TRIO protein
          protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 43 WLGIANNVKIELHGYCD 59
          WL ++   K  L+ YC+
Sbjct: 49 WLSVSQQEKCPLNKYCE 65


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,530
Number of Sequences: 2123
Number of extensions: 2760
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 83
length of database: 516,269
effective HSP length: 53
effective length of query: 30
effective length of database: 403,750
effective search space: 12112500
effective search space used: 12112500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)