GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002240-TA|BGIBMGA002240-PA|IPR008042|Retrotransposon,
Pao
         (83 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010298-1|CAA09069.1| 1571|Drosophila melanogaster polyprotein ...    72   8e-14
AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical...    71   1e-13
BT001400-1|AAN71155.1|  733|Drosophila melanogaster GH06606p pro...    69   1e-12
AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.       60   4e-10
U23420-1|AAB03640.1| 1607|Drosophila melanogaster unknown protein.     48   2e-06
AY119280-1|AAM51140.1| 1015|Drosophila melanogaster SD27140p pro...    48   2e-06
AY129297-1|AAM97765.1|  802|Drosophila melanogaster anaphase-pro...    27   2.3  
AY058717-1|AAL13946.1|  449|Drosophila melanogaster LD45730p pro...    27   2.3  
AE013599-3760|AAF47123.1|  802|Drosophila melanogaster CG3060-PA...    27   2.3  
AY121644-1|AAM51971.1|  978|Drosophila melanogaster LD11689p pro...    27   4.1  
AJ289018-1|CAC17749.1|  978|Drosophila melanogaster calsyntenin-...    27   4.1  
AE014135-195|AAN06580.1|  978|Drosophila melanogaster CG11059-PB...    27   4.1  
AE014135-194|AAF59384.2|  978|Drosophila melanogaster CG11059-PA...    27   4.1  
AE013599-2254|AAF58012.1|  442|Drosophila melanogaster CG8048-PC...    27   4.1  
AY122162-1|AAM52674.1|  785|Drosophila melanogaster LD23562p pro...    25   9.4  
AL022018-7|CAA17684.1|  771|Drosophila melanogaster EG:8D8.4 pro...    25   9.4  
AE014298-186|AAF45610.1|  771|Drosophila melanogaster CG11417-PA...    25   9.4  

>AJ010298-1|CAA09069.1| 1571|Drosophila melanogaster polyprotein
            protein.
          Length = 1571

 Score = 72.1 bits (169), Expect = 8e-14
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 1    MFMQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHGYCDA 60
            +FMQ++WL  L WD  +P DL   W N+L ++   + I++PRWL    + K+E HG+CDA
Sbjct: 991  IFMQEIWLQELGWDENVPNDLFQRWLNFLQSYSVFEQIRIPRWLSFHPDFKVEHHGFCDA 1050

Query: 61   S 61
            S
Sbjct: 1051 S 1051


>AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical
            protein protein.
          Length = 1830

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 26/61 (42%), Positives = 40/61 (65%)

Query: 1    MFMQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHGYCDA 60
            +FMQ++WL  L WD +LP ++   WQ++L  +  +  I++PRW+     V IE HG+CDA
Sbjct: 1096 IFMQEIWLQNLGWDDKLPTEMSQRWQSFLEEYSDLNQIRVPRWIWYQPEVVIEHHGFCDA 1155

Query: 61   S 61
            S
Sbjct: 1156 S 1156


>BT001400-1|AAN71155.1|  733|Drosophila melanogaster GH06606p
          protein.
          Length = 733

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 3  MQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHGYCDAS 61
          MQ++WL  L WD +LP ++   WQ++L  +  +  I++PRW+     V IE HG+CDAS
Sbjct: 1  MQEIWLQNLGWDDKLPTEMSQRWQSFLEEYSDLNQIRVPRWIWYQPEVVIEHHGFCDAS 59


>AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.
          Length = 2360

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 1    MFMQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHGYCDA 60
            +F+QKLW+   +WD EL  + K  W+ Y  N   ++ I++PRW+   ++  I++HG+ DA
Sbjct: 1041 LFIQKLWINKSEWDQELSIEDKNYWEKYKENLLLLENIRIPRWINSNSSSVIQIHGFADA 1100

Query: 61   S 61
            S
Sbjct: 1101 S 1101


>U23420-1|AAB03640.1| 1607|Drosophila melanogaster unknown protein.
          Length = 1607

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 1   MFMQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHGYCDA 60
           +  Q+ W + L WD  +PE L+T W+  + +   +   Q+PR++       ++LHG+ DA
Sbjct: 872 LIFQESWTSVLQWDDPIPESLRTRWRALVEDLPALTQCQVPRYIASPFR-DVQLHGFADA 930

Query: 61  S 61
           S
Sbjct: 931 S 931


>AY119280-1|AAM51140.1| 1015|Drosophila melanogaster SD27140p
           protein.
          Length = 1015

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 1   MFMQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHGYCDA 60
           +  Q+ W + L WD  +PE L+T W+  + +   +   Q+PR++       ++LHG+ DA
Sbjct: 280 LIFQESWTSVLQWDDPIPESLRTRWRALVEDLPALTQCQVPRYIASPFR-DVQLHGFADA 338

Query: 61  S 61
           S
Sbjct: 339 S 339


>AY129297-1|AAM97765.1|  802|Drosophila melanogaster
           anaphase-promoting complex subunit2 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 16  ELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIEL 54
           +LPE+++ E++ Y   +E  +  +   W  +   V IE+
Sbjct: 592 QLPEEIENEFKKYTKAYEAYKGNRTLNWRTVTGRVNIEI 630


>AY058717-1|AAL13946.1|  449|Drosophila melanogaster LD45730p
           protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 16  ELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIEL 54
           +LPE+++ E++ Y   +E  +  +   W  +   V IE+
Sbjct: 239 QLPEEIENEFKKYTKAYEAYKGNRTLNWRTVTGRVNIEI 277


>AE013599-3760|AAF47123.1|  802|Drosophila melanogaster CG3060-PA
           protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 16  ELPEDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIEL 54
           +LPE+++ E++ Y   +E  +  +   W  +   V IE+
Sbjct: 592 QLPEEIENEFKKYTKAYEAYKGNRTLNWRTVTGRVNIEI 630


>AY121644-1|AAM51971.1|  978|Drosophila melanogaster LD11689p
           protein.
          Length = 978

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 12  DWDSELPEDLKTEWQNYLTNFEHMQAIQL 40
           +W  ++PE    EW +Y+ N E    + L
Sbjct: 425 EWRWKIPEVCDNEWHHYVLNVEDSSKVDL 453


>AJ289018-1|CAC17749.1|  978|Drosophila melanogaster calsyntenin-1
           protein protein.
          Length = 978

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 12  DWDSELPEDLKTEWQNYLTNFEHMQAIQL 40
           +W  ++PE    EW +Y+ N E    + L
Sbjct: 425 EWRWKIPEVCDNEWHHYVLNVEDSSKVDL 453


>AE014135-195|AAN06580.1|  978|Drosophila melanogaster CG11059-PB,
           isoform B protein.
          Length = 978

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 12  DWDSELPEDLKTEWQNYLTNFEHMQAIQL 40
           +W  ++PE    EW +Y+ N E    + L
Sbjct: 425 EWRWKIPEVCDNEWHHYVLNVEDSSKVDL 453


>AE014135-194|AAF59384.2|  978|Drosophila melanogaster CG11059-PA,
           isoform A protein.
          Length = 978

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 12  DWDSELPEDLKTEWQNYLTNFEHMQAIQL 40
           +W  ++PE    EW +Y+ N E    + L
Sbjct: 425 EWRWKIPEVCDNEWHHYVLNVEDSSKVDL 453


>AE013599-2254|AAF58012.1|  442|Drosophila melanogaster CG8048-PC,
           isoform C protein.
          Length = 442

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 16  ELPEDLKTEWQNYLTNFE 33
           +LP+DLK E   YLT F+
Sbjct: 144 QLPQDLKAELPQYLTRFQ 161


>AY122162-1|AAM52674.1|  785|Drosophila melanogaster LD23562p
           protein.
          Length = 785

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 4   QKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQL-PRWLGIANNVKIELHG 56
           ++L +  +DWD    EDL     ++L     + ++++ P   G A   + E+HG
Sbjct: 239 RRLAVCNMDWDRIRAEDLMVMLSSFLPPGGSILSVKIYPSEFGKARMAEEEVHG 292


>AL022018-7|CAA17684.1|  771|Drosophila melanogaster EG:8D8.4
           protein.
          Length = 771

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 4   QKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQL-PRWLGIANNVKIELHG 56
           ++L +  +DWD    EDL     ++L     + ++++ P   G A   + E+HG
Sbjct: 225 RRLAVCNMDWDRIRAEDLMVMLSSFLPPGGSILSVKIYPSEFGKARMAEEEVHG 278


>AE014298-186|AAF45610.1|  771|Drosophila melanogaster CG11417-PA
           protein.
          Length = 771

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 4   QKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQL-PRWLGIANNVKIELHG 56
           ++L +  +DWD    EDL     ++L     + ++++ P   G A   + E+HG
Sbjct: 225 RRLAVCNMDWDRIRAEDLMVMLSSFLPPGGSILSVKIYPSEFGKARMAEEEVHG 278


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.135    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,782,498
Number of Sequences: 52641
Number of extensions: 116591
Number of successful extensions: 283
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 17
length of query: 83
length of database: 24,830,863
effective HSP length: 63
effective length of query: 20
effective length of database: 21,514,480
effective search space: 430289600
effective search space used: 430289600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)