Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002240-TA|BGIBMGA002240-PA|IPR008042|Retrotransposon,
Pao
(83 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical pr... 30 0.18
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 27 2.2
U64849-7|AAC48048.1| 307|Caenorhabditis elegans Hypothetical pr... 27 2.2
AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 27 2.2
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 27 2.2
Z35595-6|CAA84637.1| 682|Caenorhabditis elegans Hypothetical pr... 25 5.0
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 25 5.0
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 25 5.0
Z70753-9|CAA94765.1| 502|Caenorhabditis elegans Hypothetical pr... 25 6.6
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 25 8.8
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 25 8.8
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 25 8.8
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 25 8.8
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 25 8.8
AF036702-5|AAM98028.1| 1713|Caenorhabditis elegans Inositol trip... 25 8.8
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 25 8.8
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 25 8.8
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 25 8.8
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 25 8.8
AF022975-10|AAB70668.2| 661|Caenorhabditis elegans Hypothetical... 25 8.8
>Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical
protein T09E8.2 protein.
Length = 954
Score = 30.3 bits (65), Expect = 0.18
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 5 KLWLAGLDWDSELPEDLKTEWQNYLT 30
K WL +DW E E +KT WQ T
Sbjct: 465 KKWLEIMDWPPEFEESMKTLWQKRKT 490
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWL 44
+ +Q++W + + W +++P L T W+ + I +PR L
Sbjct: 1384 LLIQQIWESKVTWKTKIPGKLLTAWKK-IKEMYRDDKITVPRQL 1426
>U64849-7|AAC48048.1| 307|Caenorhabditis elegans Hypothetical
protein K04A8.2 protein.
Length = 307
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 15 SELPEDLKTEWQNYLTNFE 33
S LP D T WQNY +F+
Sbjct: 177 SILPTDFVTNWQNYTESFD 195
>AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTNFEHMQAIQLPRWL 44
+ +Q++W + + W +++P L T W+ + I +PR L
Sbjct: 1384 LLIQQIWESKVTWKTKIPGKLLTAWKK-IKEMYRDDKITVPRQL 1426
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 14 DSELPEDLKTEWQNYL--TNFEHMQAIQLPRW-LGIA 47
DSEL + LK EW++ L T ++ +AI +W +GI+
Sbjct: 344 DSELKKKLKVEWRHNLAHTKDKYKRAIFYVKWTIGIS 380
>Z35595-6|CAA84637.1| 682|Caenorhabditis elegans Hypothetical
protein C01G6.6a protein.
Length = 682
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 16 ELPEDLKTEWQN 27
+LPED K EWQN
Sbjct: 251 KLPEDTKLEWQN 262
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 33 EHMQAIQLPRWLGIANNVK 51
E ++ QLP WLG+ NN +
Sbjct: 4258 EELKNEQLPAWLGLPNNAE 4276
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 33 EHMQAIQLPRWLGIANNVK 51
E ++ QLP WLG+ NN +
Sbjct: 4258 EELKNEQLPAWLGLPNNAE 4276
>Z70753-9|CAA94765.1| 502|Caenorhabditis elegans Hypothetical
protein F40F9.10 protein.
Length = 502
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 3 MQKLWLAGLDWDSELPEDLKTEWQNY 28
++KL L+ WD E+ DL +W+ +
Sbjct: 71 VRKLALSKSLWDDEMQRDLPKKWEKH 96
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTN--FEHMQAIQLPRWLGIANNVKIELHGYC 58
+++Q L +D D+E+ + KTE+ +++ N E ++++++ + G A +E H C
Sbjct: 1526 VYLQLLLHCYIDTDAEMKDAYKTEYVDHILNNLLEDIRSLRVEKLTG-AETATLE-HYIC 1583
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTN--FEHMQAIQLPRWLGIANNVKIELHGYC 58
+++Q L +D D+E+ + KTE+ +++ N E ++++++ + G A +E H C
Sbjct: 1507 VYLQLLLHCYIDTDAEMKDAYKTEYVDHILNNLLEDIRSLRVEKLTG-AETATLE-HYIC 1564
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTN--FEHMQAIQLPRWLGIANNVKIELHGYC 58
+++Q L +D D+E+ + KTE+ +++ N E ++++++ + G A +E H C
Sbjct: 1563 VYLQLLLHCYIDTDAEMKDAYKTEYVDHILNNLLEDIRSLRVEKLTG-AETATLE-HYIC 1620
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTN--FEHMQAIQLPRWLGIANNVKIELHGYC 58
+++Q L +D D+E+ + KTE+ +++ N E ++++++ + G A +E H C
Sbjct: 1517 VYLQLLLHCYIDTDAEMKDAYKTEYVDHILNNLLEDIRSLRVEKLTG-AETATLE-HYIC 1574
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTN--FEHMQAIQLPRWLGIANNVKIELHGYC 58
+++Q L +D D+E+ + KTE+ +++ N E ++++++ + G A +E H C
Sbjct: 1517 VYLQLLLHCYIDTDAEMKDAYKTEYVDHILNNLLEDIRSLRVEKLTG-AETATLE-HYIC 1574
>AF036702-5|AAM98028.1| 1713|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform g protein.
Length = 1713
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTN--FEHMQAIQLPRWLGIANNVKIELHGYC 58
+++Q L +D D+E+ + KTE+ +++ N E ++++++ + G A +E H C
Sbjct: 1517 VYLQLLLHCYIDTDAEMKDAYKTEYVDHILNNLLEDIRSLRVEKLTG-AETATLE-HYIC 1574
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTN--FEHMQAIQLPRWLGIANNVKIELHGYC 58
+++Q L +D D+E+ + KTE+ +++ N E ++++++ + G A +E H C
Sbjct: 1526 VYLQLLLHCYIDTDAEMKDAYKTEYVDHILNNLLEDIRSLRVEKLTG-AETATLE-HYIC 1583
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTN--FEHMQAIQLPRWLGIANNVKIELHGYC 58
+++Q L +D D+E+ + KTE+ +++ N E ++++++ + G A +E H C
Sbjct: 1517 VYLQLLLHCYIDTDAEMKDAYKTEYVDHILNNLLEDIRSLRVEKLTG-AETATLE-HYIC 1574
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTN--FEHMQAIQLPRWLGIANNVKIELHGYC 58
+++Q L +D D+E+ + KTE+ +++ N E ++++++ + G A +E H C
Sbjct: 1507 VYLQLLLHCYIDTDAEMKDAYKTEYVDHILNNLLEDIRSLRVEKLTG-AETATLE-HYIC 1564
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MFMQKLWLAGLDWDSELPEDLKTEWQNYLTN--FEHMQAIQLPRWLGIANNVKIELHGYC 58
+++Q L +D D+E+ + KTE+ +++ N E ++++++ + G A +E H C
Sbjct: 1563 VYLQLLLHCYIDTDAEMKDAYKTEYVDHILNNLLEDIRSLRVEKLTG-AETATLE-HYIC 1620
>AF022975-10|AAB70668.2| 661|Caenorhabditis elegans Hypothetical
protein K09C6.1 protein.
Length = 661
Score = 24.6 bits (51), Expect = 8.8
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 7 WLAGLDWDSELP--EDLKTEWQNYLTNFEHMQAIQLPRWLGIANNVKIE 53
W + DSE+ EDL E + + N+E++ A+ + + +++ ++E
Sbjct: 554 WSLKSEEDSEVEFFEDLDQEEREHFRNYENLVALSIKDEVALSSGSEVE 602
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.135 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,172
Number of Sequences: 27539
Number of extensions: 60879
Number of successful extensions: 154
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 20
length of query: 83
length of database: 12,573,161
effective HSP length: 62
effective length of query: 21
effective length of database: 10,865,743
effective search space: 228180603
effective search space used: 228180603
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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