GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002240-TA|BGIBMGA002240-PA|IPR008042|Retrotransposon,
Pao
         (83 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   6.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    19   8.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 10  GLDWDSELPEDLKTE 24
           G  WD  +P  LK+E
Sbjct: 179 GWSWDEVMPYYLKSE 193


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 23  TEWQNYLTNFEHMQAIQLPRWLGIANNVKIELHG 56
           TE  + +  F   +A+Q+   +    N++ EL G
Sbjct: 145 TELTDPVKEFWERRALQISEGVEYVGNIRWELAG 178


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,853
Number of Sequences: 429
Number of extensions: 663
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 83
length of database: 140,377
effective HSP length: 47
effective length of query: 36
effective length of database: 120,214
effective search space:  4327704
effective search space used:  4327704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
S2: 37 (19.0 bits)