Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002239-TA|BGIBMGA002239-PA|IPR004837|Sodium/calcium
exchanger membrane region, IPR004481|K+-dependent Na+/Ca+ exchanger
related-protein
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 63 1e-10
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 48 5e-06
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 35 0.029
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 30 0.84
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.84
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 30 1.1
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 28 4.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 5.9
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 5.9
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 7.8
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 27 7.8
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 454 PWYP-VTFIISMLWISFYSYFMVWMITIIGYTLGIPDTVMGLTFVAAGVSVPDALSSLAV 512
PW + F++ ++WIS + +V ++ +G + ++++GLT AAG S+ D ++ + +
Sbjct: 582 PWVSFIGFVLGIIWISTIANEVVGILRALGVIFNLNESILGLTVFAAGNSLSDLIADIMI 641
Query: 513 IKEGYGDMAVSNAVGSNVFDILVCLGLPWFLQTAVIHPGSHVNVYSKGLIYXXXXXXXXX 572
+ G+ +MA+ G +IL+ +G+ F + H V L
Sbjct: 642 ARSGFPEMAMGGVFGGPTLNILIGIGISSFYSSISNHGNDSVIEIPHSLSITAYFLLACL 701
Query: 573 XXXXXATHANGWKLDRKYGAVLMVWYVLFITLASLYEL 610
N ++++R G +L + Y++ + + EL
Sbjct: 702 LLLLIYVPLNRFRVNRVLGLLLFILYIVGTSTNIVVEL 739
Score = 54.4 bits (125), Expect = 4e-08
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 460 FIISMLWISFYSYFMVWMITIIGYTLGIPDTVMGLTFVAAGVSVPDALSSLAVIKEGYGD 519
F+ + IS +F ++TI + L +PD+V+G+TF+A G PD LS+ A ++ G
Sbjct: 121 FLFITIGISASDFFSTNLVTI-SWLLQLPDSVVGVTFLALGNGSPDILSTFAAVRVNSGG 179
Query: 520 MAVSNAVGSNVFDILVCLG 538
MA+ +GS F + + G
Sbjct: 180 MAIGELLGSAFFIVAIVAG 198
Score = 53.6 bits (123), Expect = 8e-08
Identities = 39/152 (25%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 162 ILHILVA--MFTFIGLAIVCDEYFVSSLDRICEELRLAPDVAGATFMAAGSSAPELATVV 219
+L I+V +F FI + I ++F ++L I L+L V G TF+A G+ +P++ +
Sbjct: 111 VLSIIVGWLIFLFITIGISASDFFSTNLVTISWLLQLPDSVVGVTFLALGNGSPDILSTF 170
Query: 220 IGVFCAQDDIGVSGVIGSAVFNIMFVI-SVCALCAGTVSHLNWWPLCRDCFFYALSILVM 278
V + + ++GSA F + V SVC + + ++ RD F +IL++
Sbjct: 171 AAVRVNSGGMAIGELLGSAFFIVAIVAGSVCLIKPFKIPRRHF---LRDVAFLTGTILLV 227
Query: 279 LCTIANE-YVSWPEALFMLIMYGVYCVALRFN 309
+ + ++ +S ++L M++ Y +Y + + F+
Sbjct: 228 IMFVLHDGSLSIWQSLVMILYYLLYVLFVFFS 259
Score = 30.3 bits (65), Expect = 0.84
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 196 LAPDVAGATFMAAGSSAPELATVVIGVFCAQDDIGVSGVIGSAVFNIMFVISVCALCAGT 255
L + G T AAG+S +L ++ ++ + GV G NI+ I + + +
Sbjct: 616 LNESILGLTVFAAGNSLSDLIADIMIARSGFPEMAMGGVFGGPTLNILIGIGISSFYSSI 675
Query: 256 VSHLN 260
+H N
Sbjct: 676 SNHGN 680
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 47.6 bits (108), Expect = 5e-06
Identities = 28/141 (19%), Positives = 65/141 (46%), Gaps = 2/141 (1%)
Query: 167 VAMFTFIGLAI-VCDEYFVSSLDRICEELRLAPDVAGATFMAAGSSAPELATVVIGVFCA 225
+AM + + + +C +Y V S+D++ EE+ ++ G + +A E T ++ +
Sbjct: 266 IAMLAIVTVFVSLCADYLVGSIDQLVEEVNISKTFVGLVILPVVGNAAEHVTAIVVSYRG 325
Query: 226 QDDIGVSGVIGSAVFNIMFVISVCALCAGTVSH-LNWWPLCRDCFFYALSILVMLCTIAN 284
Q D+ + IGS++ +F+ + +S L + + +S+ ++ I +
Sbjct: 326 QMDLALGVAIGSSIQIALFLAPFLVIVGWIISQPLTLYFESLETVILFVSVFLVNYLIQD 385
Query: 285 EYVSWPEALFMLIMYGVYCVA 305
W E + +L +Y + +A
Sbjct: 386 GATHWLEGVQLLALYAIVVLA 406
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/69 (21%), Positives = 36/69 (52%)
Query: 462 ISMLWISFYSYFMVWMITIIGYTLGIPDTVMGLTFVAAGVSVPDALSSLAVIKEGYGDMA 521
I +++S + ++V I + + I T +GL + + + ++++ V G D+A
Sbjct: 271 IVTVFVSLCADYLVGSIDQLVEEVNISKTFVGLVILPVVGNAAEHVTAIVVSYRGQMDLA 330
Query: 522 VSNAVGSNV 530
+ A+GS++
Sbjct: 331 LGVAIGSSI 339
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 35.1 bits (77), Expect = 0.029
Identities = 17/77 (22%), Positives = 33/77 (42%)
Query: 13 SVFFIAYSVIQAVFSATTVSEPSAPSKADTTPDESVVKTTPPVEYTSKAGQKKEDSTDSQ 72
SV+ V+Q S+++VS ++ S + + S TT P +S + S+ S
Sbjct: 114 SVYLTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSS 173
Query: 73 GNSEEVGETATEGGKKS 89
+S +++ S
Sbjct: 174 SSSSSSSSSSSSSSSSS 190
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 30.3 bits (65), Expect = 0.84
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 32 SEPSAPSKADTTPDESVVKTT--PPVEYTSKAGQKKEDSTDSQ--GNSEEVGETATEGGK 87
SEPS PS A + P ++ V P E +S + S DS N E TAT K
Sbjct: 306 SEPSKPSIAPSQPSKTNVSAAYEKPAELSSSSVPFPHKSQDSATPANVETTPSTATSAPK 365
Query: 88 KS 89
KS
Sbjct: 366 KS 367
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.84
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 35 SAPSKADTTPDESVVKTTPPVEYTSKAGQKKEDSTDSQGNSEEVGETATEGG 86
S S +++ + S ++ E K +KKE S++S +SE ++++E G
Sbjct: 168 SESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESG 219
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 362 DTPVQETSYNPTGAYDNAAYNADPTPVW 389
D P+ SYN T N +YNA+P W
Sbjct: 130 DAPLYSPSYNNTNLLYNFSYNANPFEFW 157
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/61 (19%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 503 VPD-ALSSLAVIKEGYGDMAVSNAVGSNVFDILVCLGLPWFLQTAVIHPGSHVNVYSKGL 561
+PD + +L V+ G+G ++ + +++F+++V +FL T+++ + +V+++ +
Sbjct: 86 LPDPSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRSI 145
Query: 562 I 562
+
Sbjct: 146 V 146
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 16 FIAYSVIQAVFSATTVSEPSAPSKADTTPDESVVKTTPPVEYTSKAG 62
F+A SVI++V S T ++E A + KTTP + + AG
Sbjct: 1239 FVASSVIESVASETAIAEIDAEIEHMIVERVRHRKTTPNLPFVDPAG 1285
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 42 TTPDESVVKTTPPVEYTSKAGQKKEDSTDSQGNSEEVGETATE 84
+TP + K + P+ S + DST+ Q N+ ++ E +E
Sbjct: 1217 STPQAMLTKDSTPLSSDSATPGFERDSTEEQSNTNDMDEDRSE 1259
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 360 TNDTPVQETSYNPTGAYDNAAYNADPTPVWDPN 392
++ +PV + NP+ Y++ Y D P+ PN
Sbjct: 451 SSTSPVAPSDRNPSRQYNSIRYGLDVNPIAPPN 483
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 125 AWVIPTVHPFRENCTPPAIEQFPKPLMGQKAR 156
A I +H + + TP E+FP P G+K R
Sbjct: 396 ATYINKLHDWCKQATPVLEEEFPSPYWGEKER 427
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.136 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,265
Number of Sequences: 5004
Number of extensions: 108399
Number of successful extensions: 322
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 17
length of query: 625
length of database: 2,362,478
effective HSP length: 77
effective length of query: 548
effective length of database: 1,977,170
effective search space: 1083489160
effective search space used: 1083489160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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