Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002239-TA|BGIBMGA002239-PA|IPR004837|Sodium/calcium
exchanger membrane region, IPR004481|K+-dependent Na+/Ca+ exchanger
related-protein
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32) 189 5e-48
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.) 187 2e-47
SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27) 181 1e-45
SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 3e-41
SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36) 149 9e-36
SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0) 130 3e-30
SB_8443| Best HMM Match : Calx-beta (HMM E-Value=0) 47 5e-05
SB_15333| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 2e-04
SB_44420| Best HMM Match : Calx-beta (HMM E-Value=2e-22) 41 0.003
SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039) 40 0.005
SB_57886| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.69
SB_14943| Best HMM Match : CRAL_TRIO (HMM E-Value=8e-05) 31 2.8
SB_14909| Best HMM Match : Spb1_C (HMM E-Value=0) 31 3.7
SB_39909| Best HMM Match : NHL (HMM E-Value=7.4e-05) 30 6.4
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20) 29 8.5
SB_39054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.5
SB_28344| Best HMM Match : Ion_trans_2 (HMM E-Value=5.9e-38) 29 8.5
>SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32)
Length = 228
Score = 189 bits (461), Expect = 5e-48
Identities = 83/158 (52%), Positives = 115/158 (72%)
Query: 156 RKHGGLILHILVAMFTFIGLAIVCDEYFVSSLDRICEELRLAPDVAGATFMAAGSSAPEL 215
+K GG++ H+ VA++TF LA VCDEYFVSSL+RIC+ L L DVAGATFMAAGSSAPE
Sbjct: 7 QKQGGIVFHVFVAIYTFAALATVCDEYFVSSLERICDGLNLKSDVAGATFMAAGSSAPEF 66
Query: 216 ATVVIGVFCAQDDIGVSGVIGSAVFNIMFVISVCALCAGTVSHLNWWPLCRDCFFYALSI 275
T VIGVF + DIG+ ++GSAVFNI+F++++C + AG+V L+WWPL RD F Y LS+
Sbjct: 67 FTSVIGVFITKGDIGIGTIVGSAVFNILFIVAICGMFAGSVLTLSWWPLTRDSFCYMLSV 126
Query: 276 LVMLCTIANEYVSWPEALFMLIMYGVYCVALRFNTALE 313
++ ++ V W E + +++MY +Y + FN+ LE
Sbjct: 127 AALVIITYDKEVHWYEGMALVLMYLLYVTIMYFNSTLE 164
Score = 39.9 bits (89), Expect = 0.006
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 485 LGIPDTVMGLTFVAAGVSVPDALSSLAVIKEGYGDMAVSNAVGSNVFDILVCLGL 539
L + V G TF+AAG S P+ +S+ + GD+ + VGS VF+IL + +
Sbjct: 45 LNLKSDVAGATFMAAGSSAPEFFTSVIGVFITKGDIGIGTIVGSAVFNILFIVAI 99
>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 187 bits (456), Expect = 2e-47
Identities = 84/180 (46%), Positives = 113/180 (62%), Gaps = 5/180 (2%)
Query: 434 WYIAFPVHWSCRHTMPDCR----GPWYPVTFIISMLWISFYSYFMVWMITIIGYTLGIPD 489
W PVH + TMPDCR WYP TF +S++W++ SY +VW ++IIG T IP+
Sbjct: 423 WIFMLPVHLAFYVTMPDCRVKKWEAWYPATFALSIIWMAALSYVLVWTVSIIGETFSIPE 482
Query: 490 TVMGLTFVAAGVSVPDALSSLAVIKEGYGDMAVSNAVGSNVFDILVCLGLPWFLQTAVIH 549
+MGLT +AAG SVPD +SSL V K G GDMA++N +GSN+FD+L CLGLPW L T +H
Sbjct: 483 YIMGLTLLAAGSSVPDVMSSLIVAKHGMGDMALANCIGSNIFDVL-CLGLPWLLATTAVH 541
Query: 550 PGSHVNVYSKGLIYXXXXXXXXXXXXXXATHANGWKLDRKYGAVLMVWYVLFITLASLYE 609
P S V ++S ++Y A H NGW+LDR+ G +L + Y F+T A + E
Sbjct: 542 PNSVVLIHSGHIVYVSMCLFGTVLTIVSAIHLNGWRLDRRLGVILFIAYAFFLTSAVILE 601
Score = 156 bits (379), Expect = 4e-38
Identities = 67/158 (42%), Positives = 106/158 (67%)
Query: 156 RKHGGLILHILVAMFTFIGLAIVCDEYFVSSLDRICEELRLAPDVAGATFMAAGSSAPEL 215
R+HG +I+H + ++ F+ LAI+CD YF +SL+++C+ LR+ DVAGATFMAAGSS P L
Sbjct: 45 RRHGAVIIHTFICLYCFVALAILCDNYFCASLEKLCKRLRIPTDVAGATFMAAGSSMPTL 104
Query: 216 ATVVIGVFCAQDDIGVSGVIGSAVFNIMFVISVCALCAGTVSHLNWWPLCRDCFFYALSI 275
+ VF + DIG+ +IGS++FNI+F+ ++C L +G V L+ WP+ RD Y +++
Sbjct: 105 FIAIASVFMGEGDIGLGTIIGSSMFNILFITAICGLFSGMVISLHTWPIVRDSCVYVVNL 164
Query: 276 LVMLCTIANEYVSWPEALFMLIMYGVYCVALRFNTALE 313
+ +L I + + + EAL ++Y Y + + FNT LE
Sbjct: 165 VGLLIVIHDNVIHFYEALIFPVLYTGYILIMVFNTRLE 202
Score = 44.8 bits (101), Expect = 2e-04
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 485 LGIPDTVMGLTFVAAGVSVPDALSSLAVIKEGYGDMAVSNAVGSNVFDIL 534
L IP V G TF+AAG S+P ++A + G GD+ + +GS++F+IL
Sbjct: 83 LRIPTDVAGATFMAAGSSMPTLFIAIASVFMGEGDIGLGTIIGSSMFNIL 132
Score = 35.9 bits (79), Expect = 0.098
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 190 ICEELRLAPDVAGATFMAAGSSAPELATVVIGVFCAQDDIGVSGVIGSAVFNIMFVISVC 249
I E + + G T +AAGSS P++ + +I D+ ++ IGS +F+++ + +
Sbjct: 474 IGETFSIPEYIMGLTLLAAGSSVPDVMSSLIVAKHGMGDMALANCIGSNIFDVL-CLGLP 532
Query: 250 ALCAGTVSHLN 260
L A T H N
Sbjct: 533 WLLATTAVHPN 543
>SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27)
Length = 236
Score = 181 bits (441), Expect = 1e-45
Identities = 86/200 (43%), Positives = 123/200 (61%), Gaps = 4/200 (2%)
Query: 427 NKFQLACWYIAFPVHWSCRHTMPDCRGP----WYPVTFIISMLWISFYSYFMVWMITIIG 482
N + CW + P++ S T+PD + P W ++FII ++WI SY +VWM+T+IG
Sbjct: 34 NVWPRICWVLGLPINLSFFLTIPDVKKPSCEKWVVLSFIICIVWIGVTSYVLVWMVTVIG 93
Query: 483 YTLGIPDTVMGLTFVAAGVSVPDALSSLAVIKEGYGDMAVSNAVGSNVFDILVCLGLPWF 542
YT IPD+VMGL+ VA G SVPD LSSL V ++G GDMAVS+ VGSNVFDIL+CLG+PW
Sbjct: 94 YTFLIPDSVMGLSLVAFGSSVPDCLSSLFVARKGDGDMAVSHTVGSNVFDILLCLGIPWL 153
Query: 543 LQTAVIHPGSHVNVYSKGLIYXXXXXXXXXXXXXXATHANGWKLDRKYGAVLMVWYVLFI 602
++T V S V + S GL W L++K G + +V+Y +F+
Sbjct: 154 IKTTVWEYDSSVVINSHGLFISCFFILGSIAVTLIIIWYYKWTLNKKVGCIYLVFYFIFM 213
Query: 603 TLASLYELNIFGEYNKPDCI 622
+++ + E+N FG +N P C+
Sbjct: 214 SISVVVEMNAFGNFNPPMCV 233
Score = 37.9 bits (84), Expect = 0.024
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 196 LAPD-VAGATFMAAGSSAPELATVVIGVFCAQDDIGVSGVIGSAVFNIMFVISVCALCAG 254
L PD V G + +A GSS P+ + + D+ VS +GS VF+I+ + + L
Sbjct: 97 LIPDSVMGLSLVAFGSSVPDCLSSLFVARKGDGDMAVSHTVGSNVFDILLCLGIPWLIKT 156
Query: 255 TVSH------LNWWPLCRDCFFYALSILVMLCTIANEYVSW 289
TV +N L CFF SI V L I Y W
Sbjct: 157 TVWEYDSSVVINSHGLFISCFFILGSIAVTLIII--WYYKW 195
>SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 167 bits (405), Expect = 3e-41
Identities = 79/182 (43%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Query: 432 ACWYIAFPVHWSCRHTMPDCRGP-W---YPVTFIISMLWISFYSYFMVWMITIIGYTLGI 487
A W P T+PDCR W Y VTF ++++W++ SYF+VWM+ IIGYT I
Sbjct: 169 ALWVFTLPSILVFYVTIPDCRKKTWRKFYLVTFTVAVIWMAVLSYFLVWMVAIIGYTYTI 228
Query: 488 PDTVMGLTFVAAGVSVPDALSSLAVIKEGYGDMAVSNAVGSNVFDILVCLGLPWFLQTAV 547
P+ VMG+TF+AAG S+PDA++SL V K+G GDMAVSN +GSNVFD+L CLG+PW +++A
Sbjct: 229 PECVMGMTFLAAGSSLPDAIASLVVAKQGSGDMAVSNCIGSNVFDML-CLGIPWLIKSAF 287
Query: 548 IHPGSHVNVYSKGLIYXXXXXXXXXXXXXXATHANGWKLDRKYGAVLMVWYVLFITLASL 607
+ PG V + S+ + + N WKL+ K G ++ Y LF+ +A+
Sbjct: 288 LQPGKPVVIQSENIFFTSAMLIGSIAVTFLLIQFNKWKLNVKVGIAFLIMYFLFLIVATY 347
Query: 608 YE 609
E
Sbjct: 348 IE 349
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 245 VISVCALCAGTVSHLNWWPLCRDCFFYALSILVMLCTIANEYVSWPEALFMLIMYGVYCV 304
V +C+ C + H + RD Y S++V++ +I + V W E L +I+Y +Y V
Sbjct: 39 VAQLCSTCEVSKYHSHRRWKMRDSTVYVASVIVLMVSIYDNKVYWYEGLIFVIVYAIYIV 98
Query: 305 ALRFNTALEQWAMTLPLPFK 324
+ FN +E T+ K
Sbjct: 99 IMYFNDQVEGLCKTVKKKLK 118
Score = 36.7 bits (81), Expect = 0.056
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 200 VAGATFMAAGSSAPELATVVIGVFCAQDDIGVSGVIGSAVFNIM 243
V G TF+AAGSS P+ ++ D+ VS IGS VF+++
Sbjct: 232 VMGMTFLAAGSSLPDAIASLVVAKQGSGDMAVSNCIGSNVFDML 275
>SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)
Length = 183
Score = 149 bits (360), Expect = 9e-36
Identities = 67/147 (45%), Positives = 102/147 (69%), Gaps = 2/147 (1%)
Query: 170 FTFIGLAIVCDEYFVSSLDRICEELRLAPDVAGATFMAAGSSAPELATVVIGVFC-AQDD 228
+ F+ LAI CDE+FV SL I E+L L DVAGATFMAAG SAPEL T IG F + +
Sbjct: 3 YMFLALAIACDEFFVPSLTVIIEKLELKEDVAGATFMAAGGSAPELFTSFIGTFIDPKSN 62
Query: 229 IGVSGVIGSAVFNIMFVISVCALCAGTVSHLNWWPLCRDCFFYALSILVMLC-TIANEYV 287
+G+ ++GSAVFN++FVI +CA+ + V L WWPL RDC FY+L++++++ ++ + +
Sbjct: 63 VGIGTIVGSAVFNVLFVIGMCAMFSKGVLELTWWPLFRDCIFYSLALIILIIFFLSGDVI 122
Query: 288 SWPEALFMLIMYGVYCVALRFNTALEQ 314
W E+L +L+ Y Y + +++N +E+
Sbjct: 123 VWWESLVLLLCYFAYVIFMKYNHNVER 149
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 473 FMVWMITIIGYTLGIPDTVMGLTFVAAGVSVPDALSS-LAVIKEGYGDMAVSNAVGSNVF 531
F V +T+I L + + V G TF+AAG S P+ +S + + ++ + VGS VF
Sbjct: 15 FFVPSLTVIIEKLELKEDVAGATFMAAGGSAPELFTSFIGTFIDPKSNVGIGTIVGSAVF 74
Query: 532 DILVCLGL 539
++L +G+
Sbjct: 75 NVLFVIGM 82
>SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0)
Length = 582
Score = 130 bits (314), Expect = 3e-30
Identities = 69/150 (46%), Positives = 96/150 (64%), Gaps = 3/150 (2%)
Query: 165 ILVAMFTF--IGLAIVCDEYFVSSLDRICEELRLAPDVAGATFMAAGSSAPELATVVIGV 222
++V F F + LAIVCD++FV SL+ I E+L L+ DVAGATFMAAGSSAPEL T + GV
Sbjct: 19 LIVDFFRFFRLALAIVCDDFFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSIAGV 78
Query: 223 FCAQDDIGVSGVIGSAVFNIMFVISVCALCAGTVSHLNWWPLCRDCFFYALSILVMLCTI 282
D+GV ++GSA+FN++ +I++ A +G V L+W PL RD Y+LSI +
Sbjct: 79 -TVDSDVGVGTIVGSAIFNLLVIIALTAAFSGQVLQLDWRPLLRDSVAYSLSIAFFIIFS 137
Query: 283 ANEYVSWPEALFMLIMYGVYCVALRFNTAL 312
+ EA +LI+Y Y V ++FN L
Sbjct: 138 WDGKFEMYEAAVLLILYIAYIVVMKFNPKL 167
Score = 103 bits (247), Expect = 4e-22
Identities = 50/116 (43%), Positives = 75/116 (64%), Gaps = 4/116 (3%)
Query: 436 IAFPVHWSCRHTMPDCRGP----WYPVTFIISMLWISFYSYFMVWMITIIGYTLGIPDTV 491
++FP T+PDC P W+ +F +S++WI+ S+ +V ++ G L +
Sbjct: 385 LSFPFVCLYTWTIPDCSKPHNRKWFLASFTMSIVWIAILSFGLVTVVGRSGCILNVDKFT 444
Query: 492 MGLTFVAAGVSVPDALSSLAVIKEGYGDMAVSNAVGSNVFDILVCLGLPWFLQTAV 547
MGL +A G SVPDALSS+ V ++G+GDMAVSNA+GSNVFDI + LGLP+ ++ +
Sbjct: 445 MGLVIIAIGTSVPDALSSIIVARDGFGDMAVSNAIGSNVFDINLGLGLPFVIRILI 500
Score = 43.6 bits (98), Expect = 5e-04
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 473 FMVWMITIIGYTLGIPDTVMGLTFVAAGVSVPDALSSLAVIKEGYGDMAVSNAVGSNVFD 532
F V + I L + + V G TF+AAG S P+ +S+A + D+ V VGS +F+
Sbjct: 38 FFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSIAGVTVD-SDVGVGTIVGSAIFN 96
Query: 533 ILVCLGL 539
+LV + L
Sbjct: 97 LLVIIAL 103
>SB_8443| Best HMM Match : Calx-beta (HMM E-Value=0)
Length = 694
Score = 46.8 bits (106), Expect = 5e-05
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 184 VSSLDRICEELRLAPDVAGATFMAAGSSAPELATVVIGVF---CAQDDIGVSGVIGSAVF 240
VS +R+ V+ T MA GSSAPE+ VI + D+G S ++GSA F
Sbjct: 50 VSGKERVLTVKIWNETVSNLTLMALGSSAPEILLSVIEIIGNNFKAGDLGPSTIVGSAAF 109
Query: 241 NIMFVISVCALC-----AGTVSHLNWWPLCRDCFFYALSILVMLCTIANEYV--SWPEAL 293
N+ +I VC + HL + + C +A L ++ ++++ V W E +
Sbjct: 110 NLFVIIGVCVYVIPDDEVRKIKHLRVFIITAACSVFAYIWLYIIIAVSSKGVIEIW-EGI 168
Query: 294 FMLIMY 299
+M+
Sbjct: 169 LTFLMF 174
Score = 39.1 bits (87), Expect = 0.010
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 450 DCRGPWYPVTFIISMLWISFYSYFMVWMITIIGYTLGIPDTVMGLTFVAAGVSVP 504
D G W F++S+LWI + + + + G T+ + D+V+ +TFVA G S+P
Sbjct: 641 DIWGGW--ACFVVSILWIGVLTAVIGDLASHFGCTIYLADSVVAITFVALGTSLP 693
Score = 35.5 bits (78), Expect = 0.13
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 489 DTVMGLTFVAAGVSVPDALSS-LAVIKEGY--GDMAVSNAVGSNVFDILVCLGL 539
+TV LT +A G S P+ L S + +I + GD+ S VGS F++ V +G+
Sbjct: 64 ETVSNLTLMALGSSAPEILLSVIEIIGNNFKAGDLGPSTIVGSAAFNLFVIIGV 117
>SB_15333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 45.2 bits (102), Expect = 2e-04
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 30/126 (23%)
Query: 163 LHILVAMFTFIGLAIVCDEYFVSSLDRICEELRLAP-------------------DVAGA 203
L+IL ++ F+G+AIV D F+S ++ I + R VA
Sbjct: 40 LYILGMLYLFLGIAIVAD-IFMSCIEVITSKKRKVTRYDHEKGESVEIEVFVWNETVANL 98
Query: 204 TFMAAGSSAPELATVVI--------GVFCAQDDIGVSGVIGSAVFNIMFVISVCALCA-- 253
T MA GSSAPE+ V+ G A D +G ++GSA FN++ + +VC +
Sbjct: 99 TLMALGSSAPEILLAVVETGQELALGQTTATDGLGTFTIVGSASFNLLLITAVCVVSVPN 158
Query: 254 GTVSHL 259
GTV +
Sbjct: 159 GTVKRI 164
>SB_44420| Best HMM Match : Calx-beta (HMM E-Value=2e-22)
Length = 461
Score = 40.7 bits (91), Expect = 0.003
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 200 VAGATFMAAGSSAPELATVVIGVFCAQD----DIGVSGVIGSAVFNIMFVISVCAL 251
VA T MA GSSAPE+ +I + +G S ++GSA FN++ + VC +
Sbjct: 98 VANLTLMALGSSAPEILLSIIEITIMNGFEAGALGPSTIVGSAAFNLLCITGVCVM 153
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 489 DTVMGLTFVAAGVSVPDALSSL--AVIKEGY--GDMAVSNAVGSNVFDILVCLGL 539
+TV LT +A G S P+ L S+ I G+ G + S VGS F++L G+
Sbjct: 96 ETVANLTLMALGSSAPEILLSIIEITIMNGFEAGALGPSTIVGSAAFNLLCITGV 150
>SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039)
Length = 751
Score = 40.3 bits (90), Expect = 0.005
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 236 GSAVFNIMFVISVCALCAGTVSHLNWWPLCRDCFFYALSILVMLCTIANEYVSWPEALFM 295
G+ +F V+ LC G HLN P RD FY ++ M T+ + ++ EA+
Sbjct: 567 GAGIFVTTVVVGSVTLCTGGF-HLNNRPFTRDVLFYLGAVSWMFITMYRQRITMLEAIGF 625
Query: 296 LIMYGVYCVAL 306
+I Y Y V +
Sbjct: 626 IIFYFAYVVVV 636
>SB_57886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 33.1 bits (72), Expect = 0.69
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 480 IIGYTLGIPDTVMGLTFVAAGVSVPDALSS-LAVIKEGYGDMAVSN 524
++G + + ++V G+T +A G S+PD ++S A +++ D A+ N
Sbjct: 49 LLGCVVDLRNSVTGITIIAIGTSLPDTMASRSAALQDTGADAAIGN 94
>SB_14943| Best HMM Match : CRAL_TRIO (HMM E-Value=8e-05)
Length = 391
Score = 31.1 bits (67), Expect = 2.8
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 34 PSAPSKADTTPDESVVKTTPPVEYTSKAGQKKEDSTDSQGNSEEVGETATEGGKKSLK 91
PS P+++ + S VK TP S A E+STD + S E G+ GK + K
Sbjct: 252 PSPPAESKSDKPSSPVKETPVKNVPSTAS---EESTDEEKKSTENGKQYVTNGKDNGK 306
>SB_14909| Best HMM Match : Spb1_C (HMM E-Value=0)
Length = 437
Score = 30.7 bits (66), Expect = 3.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 31 VSEPSAPSKADTTPDESVVKTTPPVEYTSKAGQKKEDSTDSQGNSEEVGETATEGGKKSL 90
VSE P A TT K T + + +DS+ S + EE AT+G +K
Sbjct: 174 VSEKPMPESAKTTKPTRTKKQTDNEDDDDDDDESSDDSSGSD-SDEEYDMKATDGKQKKT 232
Query: 91 KG 92
KG
Sbjct: 233 KG 234
>SB_39909| Best HMM Match : NHL (HMM E-Value=7.4e-05)
Length = 406
Score = 29.9 bits (64), Expect = 6.4
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 247 SVCALCAGTVSHLNWWPLCRDC 268
SVCA C + H W PLCR C
Sbjct: 119 SVCAQCL-LLGHSEWHPLCRPC 139
>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
Length = 1423
Score = 29.5 bits (63), Expect = 8.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 38 SKADTTPDESVVKTTPPVEYTSKAGQKKEDSTDSQGNSEEVGETATEGGKKS 89
SK+DTT D + E+T +G+K++ D N E G + G+ S
Sbjct: 503 SKSDTTADVKSINGNMEDEWTVVSGKKRDSKRDEVKNKHE-GHLSFNSGQSS 553
>SB_39054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 803
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 172 FIGLAIVCDEYFVSSLDRICEELRLAPDVAGATFMAAGSSAPELATVV--IGVFC 224
F GL ++ D+Y + ++IC L L P A+ + L T+V G FC
Sbjct: 266 FKGLGLIKDKYKIPLKEKICAYLHLRPTTCTASSPTQVEESKLLTTLVTPFGQFC 320
>SB_28344| Best HMM Match : Ion_trans_2 (HMM E-Value=5.9e-38)
Length = 354
Score = 29.5 bits (63), Expect = 8.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 472 YFMVWMITIIGYTLGIPDTVMGLTF--VAAGVSVPDALSSLAVIKEGY 517
YF +IT IGY +P T G F + A V +P AL+ I E +
Sbjct: 121 YFATTVITTIGYGHTVPRTPRGKIFCMIYAAVGIPLALTMFQSIGERF 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.136 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,188,414
Number of Sequences: 59808
Number of extensions: 799082
Number of successful extensions: 2218
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2176
Number of HSP's gapped (non-prelim): 35
length of query: 625
length of database: 16,821,457
effective HSP length: 86
effective length of query: 539
effective length of database: 11,677,969
effective search space: 6294425291
effective search space used: 6294425291
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)
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