Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002238-TA|BGIBMGA002238-PA|IPR007087|Zinc finger,
C2H2-type
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 75 1e-14
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 74 3e-14
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 68 1e-12
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 66 6e-12
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 64 2e-11
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 63 4e-11
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 62 1e-10
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 61 2e-10
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 58 1e-09
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 58 2e-09
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 56 6e-09
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 48 1e-06
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 32 0.088
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 32 0.088
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 31 0.15
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 1.1
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 29 1.1
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 28 1.9
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 28 1.9
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 5.8
SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|ch... 26 7.6
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 26 7.6
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 75.4 bits (177), Expect = 1e-14
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 173 LQQENEAKLMNARKQRPKKYKCPH--CNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKS 230
L E E+K + + K K + CP+ C +S L+ H+R H+ ERP+ CD C K+
Sbjct: 7 LSIEIESKNLRSAK---KIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKA 63
Query: 231 FTRNEELTRHKRIHSGVRPFPC--ATCGKKFGRRDHLKKHTRTH 272
F R L HKR H+ V+PF C C +F + HL++H H
Sbjct: 64 FYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVH 107
Score = 55.6 bits (128), Expect = 8e-09
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 194 CPHCNVGFSNNGQLKGHIRIHTG----ERPYKCDEKNCGKSFTRNEELTRH-KRIHSGVR 248
C C F L+ H+ +H + Y C + C KSFTR+ L +H IH G
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265
Query: 249 PFPCATCGKKFGRRDHLKKH 268
F C +CG KFG + L++H
Sbjct: 266 AFHCDSCGTKFGYKHMLQRH 285
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 178 EAKLMNARKQRPKKYKCPHCNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEEL 237
E L +RP C+ F LK H R HT +P+ C C F + L
Sbjct: 41 EQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHL 100
Query: 238 TRHKRIHSGVRPFPCA--TCGKKFGRRDHLKKH 268
RH +H +P+ C C + F + L+ H
Sbjct: 101 ERHIEVHRKPKPYACTWEGCDECFSKHQQLRSH 133
Score = 42.7 bits (96), Expect = 6e-05
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 187 QRPKKYKCPH--CNVGFSNNGQLKGHI-RIHTGERPYKCDEKNCGKSFTRNEELTRH-KR 242
++PK Y C C+ FS + QL+ HI HT PY C ++C F ++L H R
Sbjct: 108 RKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNR 167
Query: 243 IHSGVRPFPC 252
H + + C
Sbjct: 168 AHEKIISYSC 177
Score = 39.1 bits (87), Expect = 8e-04
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 192 YKCPH--CNVGFSNNGQLKGHI-RIHTGERPYKCDEKNC--GKSFTRNEELTRHKRIHSG 246
Y C + C + F+ +L+ H+ R H Y C ++C + F + +L H I
Sbjct: 144 YPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNH--IREA 201
Query: 247 VRPFPCATCGKKFGRRDHLKKHTRTHFVQAERMMPVFVPL 286
P C+ CG++F HL+ H H E P+
Sbjct: 202 HVP-SCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPM 240
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 73.7 bits (173), Expect = 3e-14
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 197 CNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPCATCG 256
CN F+ LK H+ HT RP++C C KSF R + RH+++H+G++ F C TC
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSI--CKKSFARQHDKRRHEQLHTGIKAFACVTCN 634
Query: 257 KKFGRRDHLKKHTRTHFVQ 275
++F R D L +H ++ Q
Sbjct: 635 QRFARMDALNRHYKSEVGQ 653
Score = 50.4 bits (115), Expect = 3e-07
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 220 YKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPCATCGKKFGRRDHLKKHTRTH 272
Y C C K FTR L H H+ RPF C+ C K F R+ ++H + H
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLH 622
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 190 KKYKCPHCNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEELTRHKRIHSGVRP 249
+ ++C C F+ + H ++HTG + + C C + F R + L RH + G
Sbjct: 598 RPFQCSICKKSFARQHDKRRHEQLHTGIKAFAC--VTCNQRFARMDALNRHYKSEVGQNC 655
Query: 250 FPCAT 254
AT
Sbjct: 656 LRTAT 660
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 68.1 bits (159), Expect = 1e-12
Identities = 28/57 (49%), Positives = 35/57 (61%)
Query: 189 PKKYKCPHCNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEELTRHKRIHS 245
P+ YKCP C F HIR HTGE+P+ C C K F+R++ELTRH RIH+
Sbjct: 23 PRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 55.2 bits (127), Expect = 1e-08
Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 218 RPYKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPCA--TCGKKFGRRDHLKKHTRTH 272
RPYKC C K+F R E TRH R H+G +P C C K+F R D L +H R H
Sbjct: 24 RPYKCPL--CTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIH 78
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 66.1 bits (154), Expect = 6e-12
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 191 KYKCPH--CNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEELTRHKRIHSGVR 248
KY C + CN + ++ HI+ H +RPY+CD C F R+ +L RH RIH R
Sbjct: 442 KYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDL--CKAGFVRHHDLKRHLRIHENGR 499
Query: 249 PFPCATCGKKFGRRDHLKKH 268
P+ C C K+F R D L +H
Sbjct: 500 PYVC-ECLKRFNRLDALNRH 518
Score = 53.2 bits (122), Expect = 4e-08
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 171 RILQQEN-EAKLMNARKQRPKKYKCPHCNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGK 229
RI ++ N E+ + RP Y+C C GF + LK H+RIH RPY C+ C K
Sbjct: 453 RIARKYNVESHIQTHLSDRP--YRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE---CLK 507
Query: 230 SFTRNEELTRHKR 242
F R + L RHK+
Sbjct: 508 RFNRLDALNRHKQ 520
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 220 YKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPCATCGKKFGRRDHLKKHTRTH 272
Y C C K R + H + H RP+ C C F R LK+H R H
Sbjct: 443 YVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIH 495
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 64.5 bits (150), Expect = 2e-11
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 191 KYKCPHCNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEELTRHKRIH 244
+Y+C C GFS LK H HTGERP+ CD CGK+F + RH+RIH
Sbjct: 467 RYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 220 YKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPC--ATCGKKFGRRDHLKKHTRTH 272
Y+C E C + F+R L H H+G RPF C A CGK F R ++++H R H
Sbjct: 468 YRCTE--CLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 63.3 bits (147), Expect = 4e-11
Identities = 26/55 (47%), Positives = 32/55 (58%)
Query: 190 KKYKCPHCNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEELTRHKRIH 244
K Y+CP C F HIR HTGE+P++C +C K FTR +EL RH R H
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 218 RPYKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPCA--TCGKKFGRRDHLKKHTRTHFVQ 275
+ Y+C C + F R E RH R H+G +PF C+ +C K+F RRD L +H RTH +
Sbjct: 2 KSYECPF--CKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLRK 59
Query: 276 A 276
A
Sbjct: 60 A 60
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 247 VRPFPCATCGKKFGRRDHLKKHTRTH 272
++ + C C + F R++H +H R+H
Sbjct: 1 MKSYECPFCKRVFHRQEHQVRHIRSH 26
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 61.7 bits (143), Expect = 1e-10
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 207 LKGHIRIHT-GERPYKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPCATCGKKFGRRDHL 265
LK R H G+ + C +C KSFTR E L RH+R H V+ F C+ C + F R D L
Sbjct: 12 LKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVL 71
Query: 266 KKHTRTHFVQAERM 279
+H + +Q + +
Sbjct: 72 NRHVQQMHLQKQNL 85
Score = 33.5 bits (73), Expect = 0.038
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 180 KLMNARKQRPKKYKC--PHCNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEEL 237
K A + ++ C P C F+ L+ H R H + + C C ++F R++ L
Sbjct: 14 KRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSC--SFCNRAFARSDVL 71
Query: 238 TRH 240
RH
Sbjct: 72 NRH 74
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 60.9 bits (141), Expect = 2e-10
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 216 GERPYKCDEKNCGKSFTRNEELTRHKR-IHSGVRPFPCATCGKKFGRRDHLKKHTRTHFV 274
G + + C E C K F R+E L RH R +H+ +PF C CGK+F RRD+L++H R H
Sbjct: 419 GGKSFVCPE--CSKKFKRSEHLRRHIRSLHTSEKPFVCI-CGKRFSRRDNLRQHERLHVN 475
Query: 275 QAERMMPVFVP 285
+ R+ F P
Sbjct: 476 ASPRLACFFQP 486
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 174 QQENEAKLMNARKQRPKKYKCPHCNVGFSNNGQLKGHIR-IHTGERPYKCDEKNCGKSFT 232
+Q + K R K + CP C+ F + L+ HIR +HT E+P+ C CGK F+
Sbjct: 405 RQPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC---ICGKRFS 461
Query: 233 RNEELTRHKRIHSGVRP 249
R + L +H+R+H P
Sbjct: 462 RRDNLRQHERLHVNASP 478
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 183 NARKQRPKKYKCPHCNVGFSNNGQLKGHIRIHTGERPYKCDE-----KNCGKSFTRNEEL 237
NA Q+ K+Y C C F+ LK HIR HT E+P+ C E CG+ F+R + L
Sbjct: 61 NAPPQKVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLL 120
Query: 238 TRH-KRIHSGVRP 249
RH ++IH +P
Sbjct: 121 LRHQQKIHRNPQP 133
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 218 RPYKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPCAT-------CGKKFGRRDHLKKH 268
+ Y C+ C ++F R E L RH R H+ +PF C+ CG++F RRD L +H
Sbjct: 68 KQYVCE--TCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRH 123
Score = 35.5 bits (78), Expect = 0.009
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 247 VRPFPCATCGKKFGRRDHLKKHTRTH 272
V+ + C TC + F R +HLK+H R+H
Sbjct: 67 VKQYVCETCTRAFARLEHLKRHIRSH 92
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 58.0 bits (134), Expect = 2e-09
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 217 ERPYKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPCATCGKKFGRRDHLKKH 268
+R + CD+ C K FTR+E LTRHK HS P PC C K R+D LK+H
Sbjct: 28 KRVFPCDQ--CAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRH 77
Score = 32.3 bits (70), Expect = 0.088
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 225 KNCGKSFTRNEELTRHKRIHSGVRPFPCATCGKKFGRRDHLKKHTRTH 272
+N + +LT I S R FPC C K+F R ++L +H H
Sbjct: 7 ENSTNVLSAKRKLTEPSLIDSK-RVFPCDQCAKRFTRHENLTRHKACH 53
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 56.0 bits (129), Expect = 6e-09
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 216 GERPYKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPCATCGKKFGRRDHLKKHTRTHFVQ 275
G+ YKCD + C KSFTR E RH R H+ + F C C F R D L +H V+
Sbjct: 13 GDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVK 72
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 178 EAKLMNARKQRPKKYKCPH--CNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNE 235
+AK A ++ +YKC C F+ + H R HT + + C +C SFTR++
Sbjct: 3 KAKKSRAYQEGDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFIC--PHCSSSFTRSD 60
Query: 236 ELTRH 240
L RH
Sbjct: 61 VLNRH 65
Score = 25.8 bits (54), Expect = 7.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 190 KKYKCPHCNVGFSNNGQLKGHI 211
K + CPHC+ F+ + L H+
Sbjct: 45 KAFICPHCSSSFTRSDVLNRHV 66
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 194 CPHCNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEELTRHKR 242
CP + ++ L H+R HTGE+P+ C C +SFTR++ L +H R
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMR 128
Score = 42.7 bits (96), Expect = 6e-05
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 196 HCNVGFSNNGQLKGHIRI---HTGER--PYKCDEKNC---GKSFTRNEELTRHKRIHSGV 247
H + G ++N +L +I H G R Y C+ +C G T L H R H+G
Sbjct: 44 HIHNGTTSNLRLISNINSILDHIGNRRPKYTCEWDDCPRKGMVQTSRFALVAHLRSHTGE 103
Query: 248 RPFPCAT--CGKKFGRRDHLKKHTRT 271
+PF C+ C + F R D L KH RT
Sbjct: 104 KPFICSVPECDRSFTRSDALAKHMRT 129
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 32.3 bits (70), Expect = 0.088
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 59 ATVSTTTADEDVNKPVDAESPVTSLSLCCDRLL--QDPQKIEVRKKESPHSEPSPLIHTL 116
A +S T+D+ V E +T L++ DRL + P+ + KK P ++ S +++ L
Sbjct: 354 AVISNRTSDKKTRSTVAEEDDITHLNISPDRLYLNKKPEDLNFWKKSVPETDKSRVLNLL 413
Query: 117 S 117
+
Sbjct: 414 A 414
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 32.3 bits (70), Expect = 0.088
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 190 KKYKCP--HCNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEELTRHKRIHSGV 247
K YKCP +C+ + N LK H ++H +C T H+
Sbjct: 348 KPYKCPVPNCDKAYKNQNGLKYH-KLHG----------HCSPITTPTPAPIPHQGFVVEN 396
Query: 248 RPFPCATCGKKFGRRDHLKKHTRTH 272
+P+ C C K++ + LK H RTH
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYH-RTH 420
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 31.5 bits (68), Expect = 0.15
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 197 CNVGFSNNGQLKGHI-RIHTGERP-YKCDEKNCGKSFTRNEELTRHKRIHSG 246
CN FS L H IH RP ++C+ + F+R++ L RH R+ G
Sbjct: 585 CNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKHG 636
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 210 HIRIHTGERPYKCDEKNCGKSFTRNEELTRHKRIHSGVRPF 250
H+R H C+ NC K F+ E++ +H + HS + PF
Sbjct: 1052 HLRGHLNNIRLNCEVSNCKKCFSNYEDMFKHLQ-HSHL-PF 1090
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 28.7 bits (61), Expect = 1.1
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 175 QENEAKLMNARKQRPKKYKCPHCNVGFSNNGQLKGHIR----IHTGERPYKCDEKNCGKS 230
+E EA+L QR C C FS+ K H++ ++ ER Y DE +
Sbjct: 191 EEIEAELARRSSQRLSPRDCLFCAASFSSFDTCKKHMKASHSLYIPEREYLVDEPSLFDY 250
Query: 231 FTRNEELTRHKRIHSGVRPFPCATCGKKFGRRDHLKKH 268
++I G F C TC ++F + ++ H
Sbjct: 251 LA--------EKISIG---FTCLTCNREFKSLEAVRAH 277
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 193 KCPHCNVGFSNNGQLKGHIRIHTGERPYKCDE---KNCGKSFTRNEELTRH 240
KC CN F ++ +L H R ER Y CD+ + + F + L RH
Sbjct: 246 KCEFCNTHFYDDDELFKHCR-EKHERCYICDQVAGRPTHQYFKNYDSLERH 295
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 92 QDPQKIEVRKKESPHSEPSPLIHTLSESPGISVHPMMYNQMVT 134
++P++ + P S SP LS P I P +YN +T
Sbjct: 362 REPERTSEDPPQLPPSPSSPSSPALSVKPNIDPQPPLYNSTLT 404
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 252 CATCGKKFGR----RDHLKKHTRTHF 273
CA CG+++G R L KH+ HF
Sbjct: 423 CANCGRRYGNDPESRKELDKHSDWHF 448
>SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 96 KIEVRKKESPHSEPSPLIHTLSESPGISVHPM 127
+ +V KK + SP +HT +E PG+ + PM
Sbjct: 70 RFKVDKKFGSATSVSP-VHTKAEEPGLGLTPM 100
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 132 MVTPEYAPSDIAQALGIPPTDPLLLESLAQGYAMELEYARIL 173
++ EY + L P D +L +S+ + Y++EL+YA L
Sbjct: 76 LIRKEYLWRTVITYLAKHP-DSILSKSVPEAYSLELDYAEFL 116
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,059
Number of Sequences: 5004
Number of extensions: 56258
Number of successful extensions: 235
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 52
length of query: 301
length of database: 2,362,478
effective HSP length: 72
effective length of query: 229
effective length of database: 2,002,190
effective search space: 458501510
effective search space used: 458501510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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