GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002236-TA|BGIBMGA002236-PA|undefined
         (581 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   1.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   2.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   2.5  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    24   3.3  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/42 (26%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 169 KRKPKSASLRSELLAKATEVQ--ANQKKAQAPTVPIRSRGMP 208
           +RKPK  ++ ++LL+  TE++   NQ      ++ ++++ +P
Sbjct: 495 RRKPKPGTIFAKLLSVLTELRTLGNQNSEMCFSLKLKNKKLP 536


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 5   RDSDISLWLHNKLGTSNDSW 24
           R SD   W +N+  TSN+ W
Sbjct: 357 RSSDEQQWRNNQPSTSNNRW 376


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 541  TRLKK-YRPIDGMVPQKIPPGSTVISAGNQQPVVS 574
            T LK+ ++P   ++   + P  TVI AG   PV++
Sbjct: 1545 TELKQAFKPKGYLLSAAVSPSKTVIDAGYDVPVLA 1579


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 500 LGNIVTIKLSENIENVLQSD--DTYLTMLSEMHFQMNYNNGQ 539
           +G++V  K+++ ++ + Q    D  +T+L ++H +  YNN Q
Sbjct: 20  VGDLVQ-KIAQKLQVLFQDQIVDEMVTVLGDLHRKPTYNNLQ 60


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,735
Number of Sequences: 317
Number of extensions: 3648
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 581
length of database: 114,650
effective HSP length: 60
effective length of query: 521
effective length of database: 95,630
effective search space: 49823230
effective search space used: 49823230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)