GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002236-TA|BGIBMGA002236-PA|undefined
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   7.2  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    27   7.2  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   9.5  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    27   9.5  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 155 VVGQQTNPIKHFTLKRKPKSASLRSELLAKATEVQANQKKAQAPTVPIRSRGMPRKMTDT 214
           +V  +T P     LK   K  S R    +      A+ KK + PTVPIR +  P + +D 
Sbjct: 235 LVETETPPPSSSKLKEDYKD-SKREMKRSNTPWSNASIKKNEVPTVPIRYKPPPWRDSDF 293

Query: 215 TPLKGLP 221
             +  LP
Sbjct: 294 ETVPKLP 300


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 12  WLHNKLGTSNDSWTSGSICSQLNAEVLKNIKDCFPELQPQVKLKLLLSFFHIPRRN 67
           W + +LG+  DSW S         ++L      F  + P V L  + +  H+P+++
Sbjct: 91  WSNIQLGSITDSWNSVYYSENAKDQILNIPAKSFQSIGPDV-LNEIHNIEHLPKKD 145


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 506 IKLSENIENVLQ-SDDTYLTMLSEMHFQMNYNNGQWTRLKKYRPIDGMVPQKIPPGS 561
           +KLS+ I++     DD ++    +  F+MN N+  +    + +P   +V     P S
Sbjct: 618 MKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKPPS 674


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 139 LLPLECLYLNKNALVSVVGQQTNPIKHFTLKRKPKSASLRSELLAKATEVQANQKKAQAP 198
           LL  + L  N    V+ V  +    K +  +RKPK++S  + L + ++ V    + A   
Sbjct: 92  LLNYKSLKSNSTTTVATVPSE----KRYFFRRKPKTSSTTNSLSSSSSSVSHMNQDANPN 147

Query: 199 TVPIRSRGMPRKMTDTTPLKGLPSLXXXXXXXXXXXTGWRSQRPGIKLL 247
           +  +    +P       P +  PS            T  +S R  I LL
Sbjct: 148 STVLTFTAVPYDSCLPAPDRHTPS-SASSRASETGTTSPQSMRNQISLL 195


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,153
Number of Sequences: 5004
Number of extensions: 71290
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 4
length of query: 581
length of database: 2,362,478
effective HSP length: 77
effective length of query: 504
effective length of database: 1,977,170
effective search space: 996493680
effective search space used: 996493680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)