GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002236-TA|BGIBMGA002236-PA|undefined
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     32   1.1  
01_06_0928 + 33085403-33089224                                         31   2.5  
06_03_1167 + 28111923-28113218                                         30   4.4  
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900...    30   4.4  
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264...    29   7.7  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    29   7.7  

>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 492 SRDNPCPNLGNIVTIKLSENIENVLQSDDTYLTMLSEMHFQMNYNNGQWTRLKKYRPIDG 551
           + +  CP + N+ T++    + ++LQ  + +L +L ++ F    N  +W +L     +D 
Sbjct: 452 AENGQCPRVDNLDTLQCK--LRDILQKSEKFLLVLDDVWFDEFNNETEWDQL-----LDP 504

Query: 552 MVPQKIPPGSTVISAGNQ 569
           +V QK   GS V+    Q
Sbjct: 505 LVSQK--EGSRVLVTSRQ 520


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 497 CPNLGNIVTIKLSENIENVLQSDDTYLTMLSEMHFQMNYNNGQWTRLKKYRPI 549
           CP +GN+ T++    + ++LQ  + +L +L ++ F  + +  +W   +   PI
Sbjct: 237 CPRIGNLDTLQCK--LRDILQESEKFLLVLDDVWFDESKSETEWDWEQLLAPI 287


>06_03_1167 + 28111923-28113218
          Length = 431

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 153 VSVVGQQTNPIKHFTLKRKPKSASLRSELLAKATEVQANQKKAQAPTVPIRSRGMPRKMT 212
           ++ + ++T P K F +  KP  +S   + L       A++ KA++P+ P   R    K T
Sbjct: 214 LNAIREETRPSKQFAVPAKPWPSSNTRQTLDSRQGTAASRAKARSPS-PRPRRQSNGKAT 272

Query: 213 DT 214
           DT
Sbjct: 273 DT 274


>01_01_1135 -
           9003823-9004182,9004308-9004367,9004441-9004683,
           9005207-9005305,9005807-9005986,9006090-9006164
          Length = 338

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 1   MANVRDSDISLWLHNKLGTSNDSWTSGSICSQLNAEVLKNIKDCFPE 47
           M+   D +  +WL     T   SWT GS   ++  E +  ++DC+PE
Sbjct: 139 MSLTEDQEKMVWL-----TDFQSWTLGSTPLKVTRETVNVLQDCYPE 180


>05_01_0334 -
           2642998-2643063,2643125-2643169,2643552-2643617,
           2643625-2643730,2643770-2644349,2645780-2645871,
           2645969-2646035,2646126-2646231,2646628-2646708,
           2646789-2647058,2647158-2648788,2648834-2649385,
           2650602-2651324,2651451-2651526
          Length = 1486

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 159 QTNPIKHFTLKRKPKSASLRSELLAKATEVQANQKKAQAPTVPIRSRGMPRKMTDTTP 216
           Q +P K+ + K KP+  + +S+  AK     + QK+  +    + +R   RK+T+ TP
Sbjct: 563 QCSPAKNLSAKDKPQLRNGKSKK-AKGHSKNSPQKRTGSIQEGVTTRSKRRKLTELTP 619


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 21/81 (25%), Positives = 37/81 (45%)

Query: 119  IFSDMIGELRRALAKHSDLGLLPLECLYLNKNALVSVVGQQTNPIKHFTLKRKPKSASLR 178
            +FS  I E+R  L +H DL +  L     +    +  + Q       F    K +S++L+
Sbjct: 2622 LFSSRIQEIRVPLQEHQDLLVTNLPATLSSLKKFLDTLEQYEVISAMFYHAEKERSSALQ 2681

Query: 179  SELLAKATEVQANQKKAQAPT 199
            SE  AK+   +A+    ++ T
Sbjct: 2682 SETSAKSMLAEASSLAEKSRT 2702


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,548,977
Number of Sequences: 37544
Number of extensions: 484376
Number of successful extensions: 1172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 8
length of query: 581
length of database: 14,793,348
effective HSP length: 86
effective length of query: 495
effective length of database: 11,564,564
effective search space: 5724459180
effective search space used: 5724459180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)