GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002236-TA|BGIBMGA002236-PA|undefined
         (581 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    30   5.2  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    30   5.2  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    29   9.0  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 162 PIKHFTLKRKPKSASLRSELLAKATEVQANQKKAQAPTVPIRSRGMPR 209
           P+K    + K K   +R  L+ K  +  A       P +PI + G+PR
Sbjct: 329 PLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPR 376


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 162 PIKHFTLKRKPKSASLRSELLAKATEVQANQKKAQAPTVPIRSRGMPR 209
           P+K    + K K   +R  L+ K  +  A       P +PI + G+PR
Sbjct: 329 PLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPR 376


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/65 (20%), Positives = 31/65 (47%)

Query: 153 VSVVGQQTNPIKHFTLKRKPKSASLRSELLAKATEVQANQKKAQAPTVPIRSRGMPRKMT 212
           +++   +T+ I        P ++++ S   +  T   ++   A+A T P+ +  +   +T
Sbjct: 276 ITLTSDRTSTITSTGSSNPPSTSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALT 335

Query: 213 DTTPL 217
            T+PL
Sbjct: 336 STSPL 340


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,082
Number of Sequences: 27539
Number of extensions: 400995
Number of successful extensions: 1012
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 3
length of query: 581
length of database: 12,573,161
effective HSP length: 85
effective length of query: 496
effective length of database: 10,232,346
effective search space: 5075243616
effective search space used: 5075243616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)