GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002235-TA|BGIBMGA002235-PA|IPR011496|Hyaluronidase
eukaryotic/prokaryotic
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    28   6.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   6.3  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 101 AHWAACSLDAPAAMEAVSWDIKLERESEQGVCEDESPLPLGRHVY 145
           +H+   S   P AM+   W  K+ R+    V  D  P PL  +++
Sbjct: 336 SHFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLF 380


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 34/196 (17%), Positives = 57/196 (29%), Gaps = 2/196 (1%)

Query: 220 TLSTTHLQALTDRPILATTVSPIENFNPVANPVMNSLVSPTKVXXXXXXXXXXXXXXXXX 279
           T S T   + T   + +T  S     + +A+  +NS  S T                   
Sbjct: 167 TTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSS 226

Query: 280 XXXXXEIPVSTLPVPILGLKS-LDDTIKIPSVSEAVLNPSVVESDSFAEENKKXXXXXXX 338
                    ++       + S +  +  + S +      S   + S A+ N         
Sbjct: 227 LASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSST 286

Query: 339 XXXXXPSIEVQQNGDMSVGDTPQTLSPTRAVPEPGIEPLDVDPPSNTGTDPDVVMTDGLS 398
                P          S   TP T   +         PL     +N+ T      T   S
Sbjct: 287 PSST-PLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSS 345

Query: 399 ENGSMQVEASNSPLSS 414
            N +    AS++PL+S
Sbjct: 346 VNSTTATSASSTPLTS 361


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,436,049
Number of Sequences: 5004
Number of extensions: 132548
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 2
length of query: 857
length of database: 2,362,478
effective HSP length: 79
effective length of query: 778
effective length of database: 1,967,162
effective search space: 1530452036
effective search space used: 1530452036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)