GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002235-TA|BGIBMGA002235-PA|IPR011496|Hyaluronidase
eukaryotic/prokaryotic
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0357 - 21344146-21344575,21344629-21345455,21345782-21345784     32   1.7  
04_03_0892 + 20596107-20596682,20597219-20597251,20597794-205978...    30   6.8  
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825...    30   6.8  
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824...    30   9.0  

>01_05_0357 - 21344146-21344575,21344629-21345455,21345782-21345784
          Length = 419

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 451 PFEHGARALRMLHDFHWLTSHAAITLRANRSSAAPETS 488
           P+ HG  ALR + D  W   H  ++ RA   +AA  T+
Sbjct: 60  PYHHGGAALRAMEDHKWRYLHDLLSRRAGDGAAAVVTA 97


>04_03_0892 +
           20596107-20596682,20597219-20597251,20597794-20597881,
           20597966-20598447,20598545-20598811,20598881-20599230,
           20599330-20599861
          Length = 775

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 547 GKFPPNITNNIQGSYTWFSKGWREAFESGAQEPWVFRGGVVADLRRLL 594
           G+ PP I+    G++ + SKGWRE  +S + +    R     +L  LL
Sbjct: 3   GERPPPISGG--GAFAFISKGWREVRDSASADLRQMRARADRELEHLL 48


>03_06_0648 +
           35280492-35280645,35281742-35281820,35282491-35282593,
           35282695-35282815,35283144-35283232,35283324-35283473,
           35285842-35287161
          Length = 671

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 357 GDTPQTLSPTRAVPEPGIEPLDVDPPSNTGTDPDVVMTDGLSENGSMQVEASNSPLSSD 415
           GD       + +VP P + P   +  SN  +   V+ + GLS    M V  +NS ++ +
Sbjct: 285 GDKDPIGRSSPSVPNPPLGPRGAERSSNLSSQTPVISSSGLSYGSGMHVGNANSRVNGN 343


>11_04_0441 +
           17781533-17781775,17782007-17782114,17782386-17782471,
           17782546-17782807,17782921-17783120,17783770-17784012,
           17784118-17784394,17784625-17784759,17784880-17784960,
           17785311-17785406,17785661-17785756,17785834-17785890,
           17785967-17786035,17786154-17786240,17786534-17786635,
           17786730-17786819,17786900-17786980,17787573-17787653,
           17787761-17787856,17787937-17787993,17788093-17788137,
           17788218-17788346
          Length = 906

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 14/27 (51%), Positives = 15/27 (55%)

Query: 672 EDDGSFTHSDATTPDSEPSDPDNKDMP 698
           EDD S T  D+TT DS   D   KD P
Sbjct: 54  EDDDSLTERDSTTSDSCGEDNSRKDPP 80


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,366,721
Number of Sequences: 37544
Number of extensions: 879382
Number of successful extensions: 1928
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1923
Number of HSP's gapped (non-prelim): 6
length of query: 857
length of database: 14,793,348
effective HSP length: 88
effective length of query: 769
effective length of database: 11,489,476
effective search space: 8835407044
effective search space used: 8835407044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)