GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002235-TA|BGIBMGA002235-PA|IPR011496|Hyaluronidase
eukaryotic/prokaryotic
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   4e-28

>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score =  124 bits (298), Expect = 4e-28
 Identities = 55/120 (45%), Positives = 77/120 (64%)

Query: 19  GVVEGPKVISKTLTTECIEEITQVLRRPPVIWDNLHANDYDQKRIFLGPYCGRSPELIPL 78
           G+   PKVIS+ +T E I+ +++VL+R PVIWDN+HANDYDQ+R+FLGPY GR  EL   
Sbjct: 688 GLAYSPKVISQHITPESIQTLSRVLKRKPVIWDNIHANDYDQRRVFLGPYHGRPVELYKH 747

Query: 79  LRGVLTNPNCEYNANMVPVRTLAHWAACSLDAPAAMEAVSWDIKLERESEQGVCEDESPL 138
           L G+LTNPNCE+ +N + + TLA W  C+    AA      ++    +   G   +E P+
Sbjct: 748 LNGILTNPNCEFESNFIAIHTLATWVRCAKGESAATVDEPMNLDPVTDKVNGEHMEEDPI 807



 Score =  106 bits (255), Expect = 7e-23
 Identities = 76/260 (29%), Positives = 112/260 (43%), Gaps = 24/260 (9%)

Query: 436  LTAEDLLLLCEAFYLPFEHGARALRMLHDFHWLTSHAAITLRANRSSAAPET-----SEW 490
            L  EDL+LL + FYLP+ HG +A   + +F WL +HA      +      E      +EW
Sbjct: 966  LQVEDLMLLVDLFYLPYNHGIKARHFITEFKWLKAHAINEDNEDFKELTEEQQKTKLTEW 1025

Query: 491  TRRRARFSFWXXXXXXXXXXXXXXXXXDLHSELQPYLWELCAVLALLDAFLKWLELGKFP 550
              R   F                     L  ++ PYLW++   ++LLD F+ WL      
Sbjct: 1026 KARAEDFHQQCQAVSDMFVRFSETPNRALLYDIYPYLWDIKESISLLDTFVTWL------ 1079

Query: 551  PNITNNIQGSYTWFSKGWREAFESGAQEPWVFRGGVVADLRRLLPVDCG-DVXXXXX--X 607
             N  + +        K  R  F     EPWVFRGG+  +L+RLLPVD   D+        
Sbjct: 1080 -NSKSRL--------KKQRPNFYPEDPEPWVFRGGLCGELQRLLPVDSNTDMYSIRAPDV 1130

Query: 608  XXXXXXXXXXXXXXDELEIYEIYNKTCREGDVSSDMFPSDLQSLPTDRLIAPFLHLSPDL 667
                          DE  +YEI   TC +G+   D+F S+  S+  DR + P++ + P+ 
Sbjct: 1131 PTTCVYTIRPFQPEDEKSMYEICLSTCDDGEDGHDLF-SNEPSMAGDRFVGPYISICPEH 1189

Query: 668  CMVLEDDGSFTHSDATTPDS 687
              V+ED         +TPD+
Sbjct: 1190 VFVVEDSEGVCGYAVSTPDA 1209



 Score = 43.6 bits (98), Expect = 7e-04
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 15/138 (10%)

Query: 709  VVGFACAALDSKEFYRLQEIAWVPELCEKYPLSLLDRTDLSEAAKEYIR-ELHXXXXXXX 767
            V G+A +  D+  FY +    W PE+ +KY     + +D + +  E+I  E H       
Sbjct: 1199 VCGYAVSTPDAATFYNMYRQTWCPEVRKKYTRPSGNSSDWTYS--EHIADEFHIPKVFLP 1256

Query: 768  XXXXXXXXXXXXXXXXXXXXXVRCGAVPAA-DSLAPARMLTCLLAALRASGANGVHTTVS 826
                                 VR   +P A D     R++ C+L+AL++ G   V++ ++
Sbjct: 1257 DELYSKHKAK-----------VRLDLLPRARDHFLAKRLMMCVLSALKSEGCTSVYSEIN 1305

Query: 827  AADTQLQQFYSKLGFVEV 844
              ++ + + Y +LGF EV
Sbjct: 1306 VNNSVMLELYCRLGFYEV 1323



 Score = 36.3 bits (80), Expect = 0.10
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 109 DAPAAMEAVSWDIKLERESEQGVCEDESPLPLGRHV---YHPRQALRQAINEWLPEFSIP 165
           D+P    A S D+K++ ++++ + ++ESP+     V   Y P  AL++A+  WL EF   
Sbjct: 813 DSPVTTNAKSADVKVDVKADE-IAKEESPMETDNVVSLPYDPDLALKEAVLAWLLEFQKE 871

Query: 166 K 166
           K
Sbjct: 872 K 872


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,105,892
Number of Sequences: 59808
Number of extensions: 963629
Number of successful extensions: 2960
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2950
Number of HSP's gapped (non-prelim): 7
length of query: 857
length of database: 16,821,457
effective HSP length: 88
effective length of query: 769
effective length of database: 11,558,353
effective search space: 8888373457
effective search space used: 8888373457
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)