GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002233-TA|BGIBMGA002233-PA|undefined
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0252 - 22403504-22404676                                         30   0.92 
09_04_0159 + 15213752-15214028,15214158-15214399                       29   2.1  

>03_05_0252 - 22403504-22404676
          Length = 390

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   KMAYHFELEFYVVLRVSGKKLVPIFMPAIQEPNGLVRSD 44
           ++  H    F V+ R SG   VP ++PA  EP+  VRS+
Sbjct: 164 RVPLHSTTSFAVLGRESGMSHVPEWLPAFPEPHTYVRSE 202


>09_04_0159 + 15213752-15214028,15214158-15214399
          Length = 172

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 56 WKMRRSLVRDATCVDTMA 73
          W+ R+++V DATC +T+A
Sbjct: 6  WRQRKAMVTDATCANTLA 23


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,022,355
Number of Sequences: 37544
Number of extensions: 130833
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 14,793,348
effective HSP length: 78
effective length of query: 101
effective length of database: 11,864,916
effective search space: 1198356516
effective search space used: 1198356516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)