GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002232-TA|BGIBMGA002232-PA|undefined
         (51 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   1.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    19   2.9  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    19   5.0  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 1.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 3   ISSHMDKKNVDPSHLSEGER 22
           IS H DK +    ++ EGER
Sbjct: 922 ISYHPDKADCRMYYMCEGER 941


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 19.4 bits (38), Expect = 2.9
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 2   RISSHMDKKNVDPSHLSEGERSETEVSGVGRN 33
           R+S+    KN DPS+  E  R   E +   R+
Sbjct: 124 RLSTTTQNKNDDPSYW-EKRRKNNEAAKRSRD 154


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 18.6 bits (36), Expect = 5.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 7   MDKKNVDPSHLSEGERSE 24
           ++KK  D  +LS  ER+E
Sbjct: 130 LEKKFRDKQYLSIAERAE 147


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166
Number of Sequences: 317
Number of extensions: 222
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 114,650
effective HSP length: 32
effective length of query: 19
effective length of database: 104,506
effective search space:  1985614
effective search space used:  1985614
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.1 bits)
S2: 34 (17.8 bits)