GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002232-TA|BGIBMGA002232-PA|undefined
         (51 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   1.6  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    23   4.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    23   4.9  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    23   6.5  

>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 9   KKNVDPSHLSEGERSETEVSGVGRNRILGMSLRP 42
           + NVD SHL +G R   +++ +   RIL   + P
Sbjct: 83  RNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDP 116


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 3   ISSHMDKKNVDPSHLSEGERSETEVSGVGRNRILGMSLRP 42
           +S+H     +DP ++     +E E+S +   R   + LRP
Sbjct: 156 VSAHAAAPGLDPRYIKTKREAEREISKISNLR--SIFLRP 193


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 8   DKKNVDPSHLSEGERSETEVSGVGRNRILGMSLRPTETEG 47
           D   +D  H+SE E ++ E S V     + ++ + T+T+G
Sbjct: 949 DASEID-EHISEHEENDDESSSVFSTGEVWVNCKFTDTDG 987


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
          Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 8  DKKNVDPSHLSEGERSETEVSGVGRNR 34
          + KN   +HL+ G+ SE  VS  G  R
Sbjct: 11 ESKNPYLAHLNNGDDSEEVVSSKGLTR 37


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,511
Number of Sequences: 5004
Number of extensions: 5644
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 51
length of database: 2,362,478
effective HSP length: 32
effective length of query: 19
effective length of database: 2,202,350
effective search space: 41844650
effective search space used: 41844650
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 45 (22.2 bits)