GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002232-TA|BGIBMGA002232-PA|undefined
         (51 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98...    25   5.7  

>05_01_0148 -
           985745-986180,986290-986385,986498-986694,986824-986919,
           987020-987059,987751-987857
          Length = 323

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 9   KKNVDPSHLSEGERSETEVSGVGRNRILGMSLRPTET 45
           + N  PS +  G RS  + +G G +R    S RP+E+
Sbjct: 284 RNNGSPSPMDNGSRSPRDGNGDGGSRGGSRSPRPSES 320


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,421,974
Number of Sequences: 37544
Number of extensions: 36870
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 1
length of query: 51
length of database: 14,793,348
effective HSP length: 32
effective length of query: 19
effective length of database: 13,591,940
effective search space: 258246860
effective search space used: 258246860
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)