GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002232-TA|BGIBMGA002232-PA|undefined
         (51 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       25   6.6  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      25   8.7  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 9   KKNVDPSHLSEGERSETEVSGVGR 32
           K +  P   SEG+  E EVSG GR
Sbjct: 784 KTDSKPDPKSEGKEDEVEVSGRGR 807


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 4    SSHMDKKNVDPSHLSEGERSETEVSGVG 31
            +S   +K+    H+ +GE+S+TEV  +G
Sbjct: 1535 NSSKKRKHQKKHHVLQGEKSDTEVEQLG 1562


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,963
Number of Sequences: 59808
Number of extensions: 42675
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 2
length of query: 51
length of database: 16,821,457
effective HSP length: 31
effective length of query: 20
effective length of database: 14,967,409
effective search space: 299348180
effective search space used: 299348180
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)