GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002232-TA|BGIBMGA002232-PA|undefined
         (51 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical ...    27   1.2  
AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical ...    25   8.5  

>AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical
           protein H37A05.1 protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 19  EGERSETEVSGVGRNRILGMSLRPTETEGYVG 50
           E E+ E E  G+  + +L  S  P E E Y+G
Sbjct: 384 EKEKLEQEEQGISLDELLNSSSNPVEIEKYLG 415


>AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.4 protein.
          Length = 547

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 4   SSHMDKKNVDPSHLSEGERSETEVSGVGRNRIL 36
           S+++DKKNVDP   +  E   T+   V + R L
Sbjct: 82  SANIDKKNVDPDSNALWEDFRTKTGSVRQVRRL 114


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,166,636
Number of Sequences: 27539
Number of extensions: 29870
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 2
length of query: 51
length of database: 12,573,161
effective HSP length: 32
effective length of query: 19
effective length of database: 11,691,913
effective search space: 222146347
effective search space used: 222146347
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)