GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002232-TA|BGIBMGA002232-PA|undefined
         (51 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   0.69 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   2.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    19   3.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          18   8.5  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 0.69
 Identities = 9/18 (50%), Positives = 9/18 (50%)

Query: 31  GRNRILGMSLRPTETEGY 48
           G   I GMSL P    GY
Sbjct: 254 GEEGIFGMSLSPIAVNGY 271


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 2.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 12  VDPSHLSEGERSETEVSGVG 31
           +DPS  S+ E    EV G+G
Sbjct: 246 LDPSSDSQNEVGFYEVEGIG 265


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.4 bits (38), Expect = 3.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 32  RNRILGMSLRPTETEGY 48
           ++ + G+SL   +T+GY
Sbjct: 236 KDGLFGLSLSALQTDGY 252


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 15  SHLSEGERSETEVSGV 30
           SH  +GE     +SG+
Sbjct: 339 SHYEDGETKSRFISGI 354


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,094
Number of Sequences: 429
Number of extensions: 349
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 51
length of database: 140,377
effective HSP length: 31
effective length of query: 20
effective length of database: 127,078
effective search space:  2541560
effective search space used:  2541560
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.6 bits)
S2: 35 (18.2 bits)