Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002231-TA|BGIBMGA002231-PA|IPR001810|Cyclin-like F-box
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 46 2e-05
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 40 6e-04
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 37 0.007
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 34 0.037
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 33 0.065
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 30 0.80
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 29 1.9
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 28 3.2
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 28 3.2
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 28 3.2
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 28 3.2
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 27 4.3
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom... 27 4.3
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 5.7
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 27 7.5
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 45.6 bits (103), Expect = 2e-05
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 223 INLYGINFVDDSHIDAFSSNCIQLECLAVNFCNKVTGSTMKTLFQRSRRLTCLLMNGCSL 282
+ LY + + + + C L+ L + +C ++ + LT + G L
Sbjct: 246 LKLYDCSKITADSLFQIAQYCPNLQTLHLTYCGQMQDQVLHFYADHLTELTDVSFQGAFL 305
Query: 283 --RSDYVMQVEWEKSSVQELDLTATDLSTECLIDMLTR-IPNLRFLSAGQINGFNDSVLK 339
S+++ + S + L+LT T +I+ + PNL L+ +I +D ++
Sbjct: 306 VSSSEWINFFKKRGSKLISLELTDTARIHVSVINAIVDCCPNLISLNLSRIFYLDDECVR 365
Query: 340 AWVEAGTARNLVALDVDSSDN-LSDEALHRFLSRHGSQLHGLVLGGMPHITDQL 392
+ AG RNLV+L ++S ++D ++ L++ GS LH L L G +TD++
Sbjct: 366 --LLAG-CRNLVSLKIESPGGIINDGSILDVLNQIGSGLHTLSLSGCTKLTDEV 416
Score = 27.5 bits (58), Expect = 4.3
Identities = 71/330 (21%), Positives = 127/330 (38%), Gaps = 45/330 (13%)
Query: 117 ITHTVLHELAAKCPNLTHMLLDFSTAMQLHDFSEMQAFPTKLRYLCICLSEVIFMEGFMR 176
IT L ++A CPNL + L + MQ T+L ++V F F+
Sbjct: 254 ITADSLFQIAQYCPNLQTLHLTYCGQMQDQVLHFYADHLTEL-------TDVSFQGAFLV 306
Query: 177 KIYNFINGLEILHLIGTXXXXXXXXXXXXXXXNV-HKLKSATPNLRVINLYGINFVDDSH 235
+IN G+ +V + + PNL +NL I ++DD
Sbjct: 307 SSSEWIN---FFKKRGSKLISLELTDTARIHVSVINAIVDCCPNLISLNLSRIFYLDDEC 363
Query: 236 IDAFSSNCIQLECLAVNFCNKVT--GSTMKTLFQRSRRLTCLLMNGCSLRSDYVMQVEWE 293
+ + C L L + + GS + L Q L L ++GC+ +D V++
Sbjct: 364 VRLLAG-CRNLVSLKIESPGGIINDGSILDVLNQIGSGLHTLSLSGCTKLTDEVLKQGIG 422
Query: 294 K--SSVQELDLTATDLSTECLIDMLTRIPNLRFLSAGQINGFNDSVLKAWVEAGTARNLV 351
++ L+L+ +L T+ ++ F + +++ +E + R +
Sbjct: 423 PCCGRLKHLNLSGLELLTDDEASIV----------------FGEWKIQSGLETLSLRRCL 466
Query: 352 ALDVDSSDNLSDEALHRFLSRHGSQLHGLVLGGMPHITDQLWQSVLQLLNNAKILIMGTQ 411
+L D+ + L G L L L GM +TD+ LQ + N + ++
Sbjct: 467 SL--------GDKTVRAVLVNSGHTLRTLDLNGMSFVTDE----ALQYIVNFPLPMLKAL 514
Query: 412 ERLGINIHVDQLMDGIANSCPNLERLELRW 441
+ I D+L+ + P LE+L L W
Sbjct: 515 DVSWIRGMNDKLVCDFESKKPTLEKL-LVW 543
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 40.3 bits (90), Expect = 6e-04
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 26 VRSPFASTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 75
VRS + E P++V L +FSYL ++C+ + +RW+ + D +W
Sbjct: 64 VRSLLFTDFTEVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIW 113
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 36.7 bits (81), Expect = 0.007
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 8/201 (3%)
Query: 218 PNLRVINLYGINFVDDSHIDAFSSNCIQLECLAVNFCNKVTGSTMKTLFQRSRRLTCLLM 277
PNL+ +N+ V+D+ + C L L + C K+T +++ L ++ L L +
Sbjct: 146 PNLKALNIGNCGLVEDTGMVQIIKRCPYLNRLIIPNCRKLTDVSLQILSEK-EDLIELDI 204
Query: 278 NGCS--LRSDYVMQVEWEKSSVQELDLT-ATDLS-TECLIDMLTRIPNLRFLSAGQINGF 333
+GC +D + ++ ++EL + T+LS +++ + +R LS +
Sbjct: 205 SGCEGFHNADTLSRLVSRNRGLKELSMDGCTELSHFITFLNLNCELDAMRALSLNNLPDL 264
Query: 334 NDSVLKAWVEAGTARNLVALDVDSSDNLSDEALHRFLSRHGSQLHGLVLGGMPHITDQLW 393
DS ++ + L +L + L+D +L L++ L L LG ITD
Sbjct: 265 KDSDIE--LITCKFSKLNSLFLSKCIGLTDSSL-LSLTKLSQSLTTLHLGHCYEITDIGV 321
Query: 394 QSVLQLLNNAKILIMGTQERL 414
Q +L+ N + G RL
Sbjct: 322 QCLLKSCKNITYIDFGGCLRL 342
Score = 34.3 bits (75), Expect = 0.037
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 37 KLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPE 83
++P++V NI SYL E+ +TVC WR T LW V + E
Sbjct: 2 RVPNEVCFNILSYLEADELRCKSTVCTSWRNFIIPT-LWEKVVFQNE 47
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 34.3 bits (75), Expect = 0.037
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 38 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 75
LP ++ I S+L R +C+ A V + W+ +A D +W
Sbjct: 113 LPVEISFRILSFLDARSLCQAAQVSKHWKELADDDVIW 150
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 33.5 bits (73), Expect = 0.065
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 34 TIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 75
T+ LP ++L+ IFS+L R + C+ W+ + D W
Sbjct: 30 TVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSW 71
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 29.9 bits (64), Expect = 0.80
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 231 VDDSHIDAFSSNCIQLE--CLAVNFCNKVTGSTMKTLFQRSRRLTCLLM 277
+ D IDAF ++C++LE A+ ++V+ T + RL+C M
Sbjct: 105 IQDELIDAFHADCVELEQYLNAIRVLSEVSPRTRDLVIGMGERLSCRFM 153
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 236 IDAFSSNCIQLECLAVNFCNKVTGSTMKTLFQRSRRLTCLLMNGCSLRSDYVMQ 289
+ + SSN + C ++ N VTGST+ F +L+ + + SL+ D +Q
Sbjct: 585 VSSASSNFLSSSCTPIDDTNSVTGSTLSCSFD-EMKLSDKIDDANSLKDDDFIQ 637
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 255 NKVTGSTMKTLFQRSRRLTCLLMNGCSLRSDYVMQVEWEKSSVQELDLTATDLSTE 310
N TG +KTLF S+ TCL + SD + + +K + ++D T +T+
Sbjct: 691 NFFTGEDIKTLFSYSKTETCLTYE-LAFDSDEIDSLTKKKDPLTKIDHTIDSPNTK 745
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 232 DDSHIDAFSSNCIQLECLAVNFCNKVTGST 261
D+ D S + I+ + +A++FC KV G T
Sbjct: 164 DEFRKDVISCSTIENKIMAISFCRKVLGQT 193
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 272 LTCLLMNGCSLRSDYVMQVEWEKSSVQELDLTATDLSTECLIDMLTRIPNLRFL 325
LT L +NGC L S V+W + L++ + + E ++ T NL+FL
Sbjct: 194 LTQLSVNGCGLNS---KDVQWITETFPSLEVLYLE-ANEIILSKATSFKNLQFL 243
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 38 LPDKVLLNIFSYLTHREICRMATVCRRWR 66
LP +VLL I L + I + VC+ WR
Sbjct: 139 LPREVLLCILQQLNFKSIVQCMQVCKHWR 167
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 31 ASTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 75
A + +L +LL I +YL +++I ++ C+ V D +W
Sbjct: 2 AKSPFLELSYDILLEISTYLDYKDIVHLSETCKSLSYVFDDKTIW 46
>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 213 LKSATPNLRVINLYGINFVDDSHIDAFSSNCIQLECLAVNFCNKVT 258
+K TP R++NL G N D H D + C + ++F N T
Sbjct: 135 VKKLTPKARILNLLGYNKPFDRH-DWLVNRCGRKVAYVIDFYNGPT 179
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 398 QLLNNAKILIMGTQERL-GINIHVDQLMDGIANSCPNLERL 437
Q ++ + + GT E + G N + + M GI N P LERL
Sbjct: 36 QQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERL 76
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 249 LAVNFCNKVTGSTMKTLFQRSRRLT 273
L+ + CN V G + TL QR+RR+T
Sbjct: 299 LSPDSCNLVVGMSNGTLSQRTRRIT 323
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.137 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,612
Number of Sequences: 5004
Number of extensions: 73231
Number of successful extensions: 222
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 19
length of query: 472
length of database: 2,362,478
effective HSP length: 75
effective length of query: 397
effective length of database: 1,987,178
effective search space: 788909666
effective search space used: 788909666
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)
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