GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002231-TA|BGIBMGA002231-PA|IPR001810|Cyclin-like F-box
         (472 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   7.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   7.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 338 LKAWVEAGTARNLVALDVDS 357
           +K W+E GT +++ A ++ S
Sbjct: 513 IKEWIERGTTKSMEAANIMS 532


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 352 ALDVDSSDNLSDEALHRFLSRHGSQLH 378
           A DV ++ N+SD AL+   + HG  ++
Sbjct: 780 AFDVKTTLNISDIALYPSQTTHGYDIY 806


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,708
Number of Sequences: 429
Number of extensions: 4416
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 472
length of database: 140,377
effective HSP length: 60
effective length of query: 412
effective length of database: 114,637
effective search space: 47230444
effective search space used: 47230444
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)