GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002230-TA|BGIBMGA002230-PA|IPR007087|Zinc finger,
C2H2-type, IPR006594|Lissencephaly type-1-like homology motif,
IPR006595|CTLH, C-terminal to LisH motif, IPR013144|CT11-RanBPM
         (409 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   4.0  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   4.0  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   4.0  

>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 46  ARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAINEELQVAYV 100
           AR+V     ++   +  P T  EID  L  +      +  K    +N EL  A V
Sbjct: 311 ARRVQVTLLQVNLSQVDPATRKEIDIFLVAIQMNPPKVSLKGYTVVNRELVTASV 365


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 46  ARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAINEELQVAYV 100
           AR+V     ++   +  P T  EID  L  +      +  K    +N EL  A V
Sbjct: 311 ARRVQVTLLQVNLSQVDPATRKEIDIFLVAIQMNPPKVSLKGYTVVNRELVTASV 365


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 46  ARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAINEELQVAYV 100
           AR+V     ++   +  P T  EID  L  +      +  K    +N EL  A V
Sbjct: 311 ARRVQVTLLQVNLSQVDPATRKEIDIFLVAIQMNPPKVSLKGYTVVNRELVTASV 365


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,404
Number of Sequences: 317
Number of extensions: 2877
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 409
length of database: 114,650
effective HSP length: 58
effective length of query: 351
effective length of database: 96,264
effective search space: 33788664
effective search space used: 33788664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)