Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002230-TA|BGIBMGA002230-PA|IPR007087|Zinc finger,
C2H2-type, IPR006594|Lissencephaly type-1-like homology motif,
IPR006595|CTLH, C-terminal to LisH motif, IPR013144|CT11-RanBPM
(409 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 149 9e-37
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 44 4e-05
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 39 0.001
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 32 0.17
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.22
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 30 0.68
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 29 1.6
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 28 2.7
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 27 3.6
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 27 4.8
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 6.3
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 8.4
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 149 bits (360), Expect = 9e-37
Identities = 104/398 (26%), Positives = 179/398 (44%), Gaps = 29/398 (7%)
Query: 28 YEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNT--EIDSLLGGMVEKLTTMKR 85
+E ++ R + E+ ++S T + + +N + +IDSLL +++T+K+
Sbjct: 20 FEQLRINFKHILRHLEHESHVINSTLTTLISQENASMDEKIEKIDSLLS----RVSTVKK 75
Query: 86 KASEAINEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVDYFLRNG 145
K + E K RL + + + + S W +VRL+R++ DY + NG
Sbjct: 76 KMKHLHDCEALFIKQTKSRLLFMN-RLQGIRDMESADFL--DWSRVRLNRLVADYMMANG 132
Query: 146 YYESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQRTARCLQWCSGNKSKLRKLNSTME 205
Y+ +A L + + L L ++ IY + + Q L WCS +++ L+K NST+E
Sbjct: 133 YHGAAALLCKDSQLENLVDLGIYKRYQLIHDSILQQELKEVLSWCSEHRAILKKNNSTLE 192
Query: 206 FNIRIQEFIELVREDRRLEAVRHARKHFSNHEEGQLVDIQHCMGMLAFPKDTEVEPYRSL 265
+R+Q FIEL++ + +A+ A+ HF +Q +LAFP+ T PY L
Sbjct: 193 LEVRLQRFIELIKSKKLCQAIAFAKAHFGTWANEHPARLQLAAALLAFPEFTNGSPYSLL 252
Query: 266 LARGRWARLVRQFRAEHXXXXXXXXXXXXXXXXXXXXXXXNTPYPLQYYLCY-------- 317
L+ RW L F + TP LCY
Sbjct: 253 LSDDRWEYLASLFTSNFTAVHNIPSVPLLHALLAAGLSSLKTP------LCYLDANDDNP 306
Query: 318 --KESSQAADCPACQAPLSGLARQLPHAHCSHSRLVCRISRLPLNEHNQPMVLPNGQVYG 375
+S CP C L+ L + LP+AH + S +V ++ L+ N P+ PNG+VYG
Sbjct: 307 LALQSQTVKQCPVCTPCLNDLGKALPYAHITQSAIVDSLTGEGLDSDNCPVAFPNGRVYG 366
Query: 376 EKALKQMMKEHGS----IICPKTKEVFCMKRVEKVYVM 409
++L + +G+ + P + + F + + KVYV+
Sbjct: 367 IQSLISWNEANGTREGFLRDPYSGKEFPFQLLRKVYVV 404
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 44.0 bits (99), Expect = 4e-05
Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 129 RKVRLDRMLVDYFLRNGYYESAWKLAESAGLRELT-NVDIYSAAAAVEAELKSQRTARCL 187
+K +D L +F R G E A + AG+ E + ++ +++ ++ ++ + +
Sbjct: 99 KKREIDTALSLHFFRQGDVELAHLFCKEAGIEEPSESLHVFTLLKSIVQGIRDKDLKLPI 158
Query: 188 QWCSGNKSKLRKLNSTMEFNIRIQEFIE--LVREDRRLEAVRHARKHFSNHEEGQLVDIQ 245
+W S + L + S++E+ ++ + L +D + A+R+ R + + ++ L DIQ
Sbjct: 159 EWASQCRGYLERKGSSLEYTLQKYRLVSNYLTTKDI-MAAIRYCRTNMAEFQKKHLADIQ 217
Query: 246 HCMGMLAFPKDTEV 259
M L F EV
Sbjct: 218 KTMIALFFCSRNEV 231
Score = 33.1 bits (72), Expect = 0.073
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 340 LPHAHCSHSRLVCRISRLPLNEHNQPMVLPNGQVYGEKALKQMMK 384
LP ++ HS C +S+ E N PM++ G V +++L+Q+ +
Sbjct: 329 LPSSYHFHSVFTCPVSKEQATEENPPMMMSCGHVIVKESLRQLSR 373
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 38.7 bits (86), Expect = 0.001
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 29 EVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKAS 88
EV +K + + +V + + A E+E + N E SL VEKLT + S
Sbjct: 553 EVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFKEEVEKLTDEITQLS 612
Query: 89 EAINEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVD 139
E N++ +KRL+ L+E+ + A+ ST T N ++++ VD
Sbjct: 613 ERYNDKCHEFDELQKRLQTLEEENNK-AKEDSTSKTSNLLEQLKMTEAEVD 662
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 31.9 bits (69), Expect = 0.17
Identities = 32/136 (23%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 74 GGMVEKLTTMKRKASEAINEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRL 133
G +++ +++K+ ++E+++A V LE L+ + S + +S T +N +R +
Sbjct: 562 GDAMQEEQRLRQKSQITPDDEVELAKVYLNALETLENKPSLAPDQASYNTRINVYRTRAV 621
Query: 134 DRMLVDYF---LRNGYYESAWKLAE--SAGL----RELTNV-DIYSAAAAVEAELKSQRT 183
+ + + + +N E+ + + + S G+ R+L ++YS AA L + R
Sbjct: 622 ELLKKNAYPSKTQNTVPEALFLIGQFHSQGVLGFRRDLGKAFELYSLAAKKGHPLSNYRV 681
Query: 184 ARCLQWCSGNKSKLRK 199
A CLQ +G K K
Sbjct: 682 AVCLQTGTGVKPDTSK 697
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.5 bits (68), Expect = 0.22
Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 11/212 (5%)
Query: 32 NKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNT----EIDSLLGGMVEKLTTMKRKA 87
N++Y+ + + +S +++ +KN+ ++ E++ +G + +L T+K K+
Sbjct: 1295 NEEYKRHNQEILLSLNSSTSTSSDASRLKNELVSKENLIEELNQEIGHLKSELETVKSKS 1354
Query: 88 SEAINEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDR-MLVDYFLRNGY 146
+ NE Q + ++E L+ + + LA ++ +T Q L++ + L
Sbjct: 1355 EDLENERAQ----NQSKIEQLELKNTKLA--AAWRTKYEQVVNKSLEKHNQIRQQLSQKT 1408
Query: 147 YESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQRTARCLQWCSGNKSKLRKLNSTMEF 206
E K+AE L E N + A ++E + S RKL+ M+
Sbjct: 1409 SELEAKVAECHQLNEQLNKPSATPTATTQSEPSTVSLEEFNSTKEELSSTQRKLSEIMDI 1468
Query: 207 NIRIQEFIELVREDRRLEAVRHARKHFSNHEE 238
+E +E VR++ N EE
Sbjct: 1469 LNTTKEELEKVRQNSNKSEGTSKDTEIPNEEE 1500
Score = 29.9 bits (64), Expect = 0.68
Identities = 41/201 (20%), Positives = 82/201 (40%), Gaps = 15/201 (7%)
Query: 34 KYRSAQRVFDVEARQVSSAATEMETVKNQPITNTE--IDSLLGGMVEKLTTMKRKASEAI 91
K + V ++E ++ S+ + KN + E ++S L + K T+++ + + ++
Sbjct: 880 KLQELNGVIELEKQRFSTLEAKFTQQKNTSYSEREALLESSLSDLQSKHTSLESQYNYSL 939
Query: 92 N--EELQVAY-VCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVDYFLRNGYYE 148
E+LQ A + ++ +E +K + +S N + L++ +V L++
Sbjct: 940 RNIEQLQAASKLAEEMVERVKTEYDEYRLQTSESLEKNHLKITSLEQRIV--ILQDEIAS 997
Query: 149 SAWKLAESAGLRELTNVDIYSAAAAVEAELKSQRTARCLQWCSGNKSKLRKLNSTMEFNI 208
S+ + E + + EL S R A K L K N + +
Sbjct: 998 SSLRCENITKDSETRVALLLEENKHLNNELSSHRNAE--------KQHLEKENDYKQQLL 1049
Query: 209 RIQEFIELVREDRRLEAVRHA 229
+ E + RED E +RHA
Sbjct: 1050 LVTEDLRKTREDYEKELLRHA 1070
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.9 bits (64), Expect = 0.68
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 14 FLNTVYNYDHAQVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEID-SL 72
+L+ V + + +Q +VF ++ R + + R+ S +TEME K+ + E +
Sbjct: 231 YLSKVNDVEQSQ-NVKVFTERIRFLENALEKVQREKDSLSTEMEEDKSNKEVDYEYEIRQ 289
Query: 73 LGGMVEKLTTMKRKASEAINEELQVAYVCKKRLEHLKEQASALA-EPSSTQTTLNQ 127
L +++L+ A + + E+ K+++E + +SA E +S+ L +
Sbjct: 290 LQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEEKENSSSAFENEENSSYVHLQE 345
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 306 NTPYPLQYYLCYKESSQAADCPACQAPLSG---LARQLPHAHCSHSRLVCR-ISRLPLNE 361
N P P+ Y Y AA+C + Q L G + + LP AH +L+ R ++R+
Sbjct: 824 NLPNPIITYDQYFPFITAANCASFQDKLDGFIMVIKSLPPAHAEILQLIIRHLARVAAYS 883
Query: 362 HNQPMVLPN 370
H M N
Sbjct: 884 HANRMTSKN 892
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 27.9 bits (59), Expect = 2.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 92 NEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVDY--FLRN-GYYE 148
N+ L + C K L+ + E ST T N + + +L+ FL+N GYYE
Sbjct: 289 NDCLNMFSKCFKFLKQKLSDRKSCKERESTDVTSNFEVEEAILHLLIRLCDFLKNCGYYE 348
Query: 149 SAWKLAES 156
AW + ++
Sbjct: 349 LAWSIFQA 356
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 138 VDYFLRNGYYESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQR 182
V+ F+R G Y S W G+ T +D ++ A + + KS++
Sbjct: 362 VNGFVRPGIYTSGWVKHGPIGVIATTMMDAFATADTITKDWKSKK 406
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 4 IKSMEHATLKFLNTVYNYDHAQVPYEVFNKKYRSAQRVFD-VEARQVSSAATEMETVKNQ 62
+K +EH + A ++ FN++ R ++FD V ++ SA ++ V +
Sbjct: 328 LKRLEHVQSELQAVEQAIQEASAVHDAFNQRVREESKLFDSVRQSEMLSAISDYANVHVE 387
Query: 63 PITN 66
TN
Sbjct: 388 FFTN 391
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 6.3
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 27 PYEVFNKKYRSAQRVFD----VEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTT 82
P EV+NKK D + ++ TE+E+ PIT + + G ++ ++
Sbjct: 36 PIEVYNKKVNDGVWKRDPYQETAVKAINRLYTELESYTQPPITQDSMPAEKGSILSWISP 95
Query: 83 MK----RKASEAINEELQV 97
+K RK S + L V
Sbjct: 96 LKKMFSRKKSPTLTSSLPV 114
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/88 (19%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 176 AELKSQRTARCLQWCSGNKSKLRKLNSTMEFNIRIQEFI----ELVREDRRLEAVRHARK 231
+ L S++ + W + ++ L S+ + ++ I + +L+RED + + +
Sbjct: 498 SHLNSEKVYSFIGWHAEALNRASILISSQDLSVVISSLVNLLDKLIREDYVFKELSSIQS 557
Query: 232 HFSNHEEGQ------LVDIQHCMGMLAF 253
+ S+H++ + LVDI+ C ++ +
Sbjct: 558 YISSHDKSKNLDLHYLVDIRECKKIMGY 585
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,148
Number of Sequences: 5004
Number of extensions: 60664
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 16
length of query: 409
length of database: 2,362,478
effective HSP length: 74
effective length of query: 335
effective length of database: 1,992,182
effective search space: 667380970
effective search space used: 667380970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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