Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002230-TA|BGIBMGA002230-PA|IPR007087|Zinc finger,
C2H2-type, IPR006594|Lissencephaly type-1-like homology motif,
IPR006595|CTLH, C-terminal to LisH motif, IPR013144|CT11-RanBPM
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0437 + 3471154-3471447,3471664-3471858,3472619-3472741,347... 188 5e-48
06_03_0610 - 22715637-22716797 71 1e-12
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 32 0.72
03_06_0112 - 31739783-31740482,31740648-31740777,31740906-31741041 31 1.3
02_05_0200 - 26681968-26682181,26683269-26683383,26683495-266835... 31 2.2
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 30 3.9
03_04_0081 + 17130557-17130964,17130971-17131085,17131239-171312... 30 3.9
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 29 5.1
01_06_1124 - 34679205-34680926,34681438-34682811 29 5.1
08_02_0514 + 18021365-18022527,18023489-18023660 29 6.7
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 29 8.9
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461... 29 8.9
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094... 29 8.9
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791... 29 8.9
01_02_0030 + 10350505-10351227 29 8.9
>05_01_0437 +
3471154-3471447,3471664-3471858,3472619-3472741,
3473245-3473430,3473633-3473766,3473866-3474052,
3474179-3474280
Length = 406
Score = 188 bits (459), Expect = 5e-48
Identities = 121/386 (31%), Positives = 189/386 (48%), Gaps = 19/386 (4%)
Query: 25 QVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMK 84
+VP E R+ R+ + E V S+A + L +V +L +K
Sbjct: 37 RVPLEALKSTVRTNHRLAEKEIAAVLSSAAAAPGGGGGGSGDAAAVDHLTSLVSRLHGLK 96
Query: 85 RKASEAIN-EELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVDYFLR 143
RK E EELQV C+ RL L ASA + + +W ++RL R+LVDY LR
Sbjct: 97 RKMEEGARAEELQVQR-CRARLNRL---ASASSGDDA------EWEELRLKRILVDYMLR 146
Query: 144 NGYYESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQRTARCLQWCSGNKSKLRKLNST 203
YY++A LAE++G+++L +VD++ A V L+++ A L WC+ N+S+L+K S
Sbjct: 147 MSYYDTAANLAETSGIQDLVDVDVFLDAKRVIDSLQNKEIAPALAWCAENRSRLKKSKSK 206
Query: 204 MEFNIRIQEFIELVREDRRLEAVRHARKHFSNHEEGQLVDIQHCMGMLAFPKDTEVEPYR 263
+EF +R+QEF+ELV+ + A+ +ARK+ S + ++Q L F T PY+
Sbjct: 207 LEFFLRLQEFVELVKAKNFMHAIAYARKYLSPWGATHMKELQRVTATLVFRSSTNCAPYK 266
Query: 264 SLLARGRWARLVRQFRAEHXXXXXXXXXXXXXXXXXXXXXXXNTPYPLQYYLCYKESSQA 323
L + +W LV QF+ E TP+ C+ +
Sbjct: 267 VLFEQNQWDSLVDQFKQEFCKLYGMTLEPLLNIYMQAGLTALKTPF------CFDGNCPK 320
Query: 324 ADCPACQAPLSGLARQLPHAHCSHSRLVCRISRLPLNEHNQPMVLPNGQVYGEKALKQMM 383
D P LA LP + HS+LVC I++ ++ N P+V PNG VY KAL +M
Sbjct: 321 ED-PLSLPGFRKLAEPLPFSKQHHSKLVCYITKELMDTENPPLVFPNGYVYSTKALDEMA 379
Query: 384 KEH-GSIICPKTKEVFCMKRVEKVYV 408
K++ G + CP+T ++ + K Y+
Sbjct: 380 KKNGGKVTCPRTGDICNYTDLVKAYI 405
>06_03_0610 - 22715637-22716797
Length = 386
Score = 71.3 bits (167), Expect = 1e-12
Identities = 66/350 (18%), Positives = 138/350 (39%), Gaps = 15/350 (4%)
Query: 38 AQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKR-KASEAINEELQ 96
AQ V D +V A T+M+ + + + S+L + KL + E +EL
Sbjct: 24 AQEVIDQIVSEVEQAITKMQMMNTDSMGTADHSSILAELKAKLNELAPLNQLEGCQKELN 83
Query: 97 VAYVCKKRLEHLKEQASALAEPSSTQTTLN-QWRKVRLDRMLVDYFLRNGYYESAWKLAE 155
VA K L+ L++ S P ++ N + ++ ++ ++F R G ++
Sbjct: 84 VAL--SKYLKLLEKSFS----PDISKAYRNVDFEASTINSIIANHFYRQGLFDLGDSFVR 137
Query: 156 SAGLRELTNVDI-YSAAAAVEAELKSQRTARCLQWCSGNKSKLRKLNSTMEFNIRIQEFI 214
G + ++ + + ++ ++ + L W + N +L + S +E + +F+
Sbjct: 138 ECGESDGAHLKLQFQEMYSILEAMQVRNLQPALSWAAKNHDQLLQNGSMLELKLHQLQFV 197
Query: 215 ELVREDRRLEAVRHARKHFSNHEEGQLVDIQHCMGMLAFPKDTEVEPYRSLLARGRWARL 274
E++ + R EA+++AR H +IQ M L + + PY ++ W +L
Sbjct: 198 EILTKGSRDEALKYARTHLVPFASLHKAEIQKLMACLLWADRLDQSPYAEFMSSTHWEKL 257
Query: 275 VRQFRAEHXXXXXXXXXXXXXXXXXXXXXXXNTPYPLQYYLCYKESSQAADCPACQAPLS 334
+ + T L + K+ A P+
Sbjct: 258 AEELTHQFCSLLGQSSESPLGVAVSAGFQGLPTLLKLTTVMAAKKQEWQA-MKQLPVPID 316
Query: 335 GLARQLPHAHCSHSRLVCRISRLPLNEHNQPMVLPNGQVYGEKALKQMMK 384
+ + + HS VC + R ++ N PM++P G V ++++ ++ K
Sbjct: 317 -IGPEFQY----HSVFVCPVLREQSSDENPPMLMPCGHVVSKQSIMKLSK 361
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 32.3 bits (70), Expect = 0.72
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 12/174 (6%)
Query: 34 KYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSL-----LGGMVEKLTTMKR-KA 87
KYR + E + S ++ K P+ N + SL + G + L K K
Sbjct: 116 KYRHWKTRDPDELEWMMSEPPSLKKPKKVPLPNMLVPSLKEKKEMSGSITLLLKHKGDKI 175
Query: 88 SEAINEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVDYFLRNGYY 147
EA N ++ VA +H A LA RK RL F ++
Sbjct: 176 KEATNVKVPVAVH-----DHFNRMARPLAPKPPISDFRRTTRKKRLKEFSKKEFEKDEAN 230
Query: 148 ESAWKLAESAGLRELTNVD-IYSAAAAVEAELKSQRTARCLQWCSGNKSKLRKL 200
++ + E AGL+ L++VD I + A + +L T + GN +++R++
Sbjct: 231 KNVQEFLEGAGLQSLSDVDNIAKSPLAAQFKLGYSLTTDEYRKVIGNCTQMRRV 284
>03_06_0112 - 31739783-31740482,31740648-31740777,31740906-31741041
Length = 321
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 16 NTVYNYDHAQVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGG 75
N + NY + ++ ++F K+ R QR ARQ ++AA++++ + E D L G
Sbjct: 103 NDIKNYWNTRLKKKLFGKQSRKDQRQQQHLARQAAAAASDLQIKQEASRGANEADGLAAG 162
>02_05_0200 -
26681968-26682181,26683269-26683383,26683495-26683531,
26683619-26683694,26683995-26684050,26684161-26684230,
26684320-26684624
Length = 290
Score = 30.7 bits (66), Expect = 2.2
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 43 DVEARQVSSAATEMETVKNQPITNTE-----IDSL--LGGMVEKLTTMKRKASEAINEEL 95
D+ +V+ A ++ NQ + E I+S +G E+ +++ R A + L
Sbjct: 5 DIRMDKVTQAVENLKEEWNQAVAQLEGCIAAIESCGKMGKGTEEASSLPRLNGSA-QDAL 63
Query: 96 QVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRK 130
Q+ + RL+ L EQ E S Q TL W++
Sbjct: 64 QLLNSLQCRLDPLAEQLPTFEEVQSGQATLQSWKE 98
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 357 LPLNEHNQPMVLPNGQVYGEKALKQMMKEHGSIICPKTKE 396
L L + P+++ +GQ Y E+ ++ + G ICPKT++
Sbjct: 252 LSLELMSDPVIVASGQTY-ERVYIKLWLDEGFTICPKTRQ 290
>03_04_0081 +
17130557-17130964,17130971-17131085,17131239-17131264,
17131508-17131789,17131877-17132600,17132608-17132830,
17132909-17133079,17133162-17133450,17133536-17133574,
17133680-17133718
Length = 771
Score = 29.9 bits (64), Expect = 3.9
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 25 QVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMK 84
Q P+ + Y QRV++ ++ +S E + I + L EKL +M+
Sbjct: 163 QHPHRLGTAGYAEDQRVYEAIYKKRTSNKAEKDARLEAKIRESIRAELTSEFDEKLESMR 222
Query: 85 RKASEAINEELQVAYVCKKRLEHLKEQASALAEPSSTQTT 124
K + I EE Q+ KE S + SS +T
Sbjct: 223 AKIRQEIREEQQIPQAAAAAAH--KELGSPTEKRSSCAST 260
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 29.5 bits (63), Expect = 5.1
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 109 KEQASALAEPSSTQTT-LNQWRKVRLDRMLVDYFLRNGYYESAWKLAESAG-LRELTNVD 166
+EQ S L + S LN K+RL R FLR G+Y SA KL ES G L L +D
Sbjct: 468 REQLSKLEDCSGMDKNHLNHLDKLRLLR-----FLRLGHY-SATKLPESIGKLESLETLD 521
Query: 167 IYSA 170
I A
Sbjct: 522 IRGA 525
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 131 VRLDRMLVDYFLRNGYYESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQR 182
V L LVDYF R G +SA K+ + +R + ++ AA A ++ S R
Sbjct: 688 VYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSAR 739
>08_02_0514 + 18021365-18022527,18023489-18023660
Length = 444
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 206 FNIRIQEFIELVREDRRLEAVRHARKHFSNHEEGQLVDIQHCMGMLAFPKDTE 258
F+ I+ + ++ED R A R+HF E ++ + HC G++ P T+
Sbjct: 114 FSTDIRFYQWSLQEDTRAAATLLYRRHFPAGEFEPVLPMAHCDGLVLLPTKTK 166
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 28.7 bits (61), Expect = 8.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 377 KALKQMMKEHGSIICPKTKEVFCMKR 402
K + QM ++H S + KT+E+F +KR
Sbjct: 626 KMMNQMKRQHDSTLQEKTEEIFRLKR 651
>02_05_1224 + 35045268-35045270,35045735-35045863,35046037-35046180,
35046306-35046451,35046583-35046739,35046838-35046896,
35046978-35047137,35047716-35047865,35047969-35048105,
35048186-35048332,35048428-35048540,35048880-35048971,
35049637-35049738,35050108-35050145,35050255-35050381,
35050462-35050632,35050721-35050852,35050929-35051038,
35051118-35051178,35051386-35051427,35051756-35051933,
35052043-35052248,35052843-35052962,35053138-35053182,
35053310-35053408,35053846-35054058,35054254-35054393,
35054469-35054583,35054684-35054722,35054816-35054899,
35054969-35055139,35055891-35056100,35056193-35056378,
35056473-35056601,35056679-35056749,35056834-35056933,
35057016-35057072,35057778-35057834,35057940-35058020,
35058256-35058338,35058448-35058562
Length = 1572
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 25 QVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMK 84
Q + ++Y+ Q + E AA VK P+ +TE+ + L +KL T+
Sbjct: 971 QATLQEVQQQYKETQEMLVKEREAAKKAAEVAPVVKEVPVIDTELMNKLRDENDKLKTLV 1030
Query: 85 RKASEAINE 93
+ I++
Sbjct: 1031 SSLEKKIDD 1039
>02_05_0405 +
28708077-28708391,28708478-28708573,28709030-28709450,
28710051-28710141,28710483-28710819,28710905-28711053,
28711782-28712295
Length = 640
Score = 28.7 bits (61), Expect = 8.9
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 6/132 (4%)
Query: 8 EHATLKFLNTVYNYDHAQVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNT 67
E A ++ T +YD + + + R D AR+ A E + V+NQ +
Sbjct: 131 ELAAIELEKTRVDYDERKKLEQQRAQVKSQMSRYEDELARKRMQADHEAQRVRNQELVKM 190
Query: 68 EIDSLLGGMVEKLTTMKRKASEAINEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQ 127
+ +S + + M+R E I EE + K +E EQ LAE ++ Q
Sbjct: 191 QEESAI-----RQEQMRRAIEEQIQEERRKTDRAKAIVEKEIEQEKILAEANARIKLKKQ 245
Query: 128 WRKVRLDRMLVD 139
V R+L++
Sbjct: 246 TEDVE-RRLLIE 256
>01_03_0205 +
13777918-13778015,13778402-13778624,13779022-13779198,
13779277-13779437,13779520-13780519,13780923-13781069,
13781149-13781376,13781471-13781628,13781807-13782161
Length = 848
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 89 EAINEELQV-AYVCKKRLEHLKEQASALAEPSSTQ 122
E I+ + V AY K RLEH+ E+ S +++ +ST+
Sbjct: 588 EGIDNSIAVDAYELKVRLEHILERISLISDAASTE 622
>01_02_0030 + 10350505-10351227
Length = 240
Score = 28.7 bits (61), Expect = 8.9
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 39 QRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAINEEL-QV 97
+RV + E A E N E D+ + M+ + T KR ++ +EL +
Sbjct: 81 KRVTNQEQYLRKRIAKARERTSKADDVNRERDATI--MLYEAATDKRPVADLNVQELTNL 138
Query: 98 AYVCKKRLEHLKEQ------ASALAEPSSTQTT 124
V +R+ HLKE+ A+ +A P STQ T
Sbjct: 139 GLVINERINHLKERIERLGGAALMAPPPSTQPT 171
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,142,497
Number of Sequences: 37544
Number of extensions: 366106
Number of successful extensions: 1115
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1104
Number of HSP's gapped (non-prelim): 16
length of query: 409
length of database: 14,793,348
effective HSP length: 84
effective length of query: 325
effective length of database: 11,639,652
effective search space: 3782886900
effective search space used: 3782886900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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