Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002230-TA|BGIBMGA002230-PA|IPR007087|Zinc finger,
C2H2-type, IPR006594|Lissencephaly type-1-like homology motif,
IPR006595|CTLH, C-terminal to LisH motif, IPR013144|CT11-RanBPM
(409 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12293| Best HMM Match : OATP (HMM E-Value=0) 186 4e-47
SB_46390| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 3e-04
SB_44268| Best HMM Match : ACCA (HMM E-Value=0.58) 38 0.011
SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54) 34 0.24
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.73
SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11) 32 0.73
SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09) 31 2.2
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_27177| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_7146| Best HMM Match : Pox_A_type_inc (HMM E-Value=2.7) 30 3.0
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29) 30 3.9
SB_54125| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 29 5.2
SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089) 29 5.2
SB_9721| Best HMM Match : Filament (HMM E-Value=0.2) 29 6.8
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.0
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.0
>SB_12293| Best HMM Match : OATP (HMM E-Value=0)
Length = 1446
Score = 186 bits (452), Expect = 4e-47
Identities = 101/252 (40%), Positives = 153/252 (60%), Gaps = 21/252 (8%)
Query: 1 MNEIKSMEHATLKFLNTVYNYDHAQVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVK 60
M +IK++E++TLK VPYEV NKK+RSAQ+V D E V A E+ +
Sbjct: 1141 MADIKALEYSTLK------------VPYEVLNKKFRSAQKVIDREVSYVVGATNELTSTL 1188
Query: 61 NQPITNT-EIDSLLGGMVEKLTTMKRKASEAINEELQVAYVCKKRLEHLKEQASALAEPS 119
++P T E+ +L + +K+ +KRK+ E I +E C+ RL+H+KE A+P
Sbjct: 1189 SKPAVKTGEVTRMLDDIAQKIQVLKRKSEEYIGQEDVCVKHCRARLDHIKEH----ADPR 1244
Query: 120 STQTTLNQWRKVRLDRMLVDYFLRNGYYESAWKLAESAGLRELTNVDIYSAAAAVEAELK 179
+ + W+K RLDRMLVD+ LR G+YE+A KLA+ A + + +++++ + VE L+
Sbjct: 1245 KSAMVV--WKKKRLDRMLVDHCLRLGFYETAKKLAQDADIEDFVDIELFLVSRQVEESLQ 1302
Query: 180 SQRTARCLQWCSGNKSKLRKLNSTMEFNIRIQEFIELVREDRRLEAVRHARKHFSNHEEG 239
+ + CL WC NKSKLRKL ST+EFN+R+QE++ELVR+ +LEAVRH + H+
Sbjct: 1303 QEDSGPCLAWCYDNKSKLRKLKSTLEFNVRMQEYVELVRKGDKLEAVRHC--YQQGHKMP 1360
Query: 240 QLVDIQHCMGML 251
+ H M +L
Sbjct: 1361 ECPVCSHPMNIL 1372
Score = 108 bits (259), Expect = 9e-24
Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 316 CYKESSQAADCPACQAPLSGLARQLPHAHCSHSRLVCRISRLPLNEHNQPMVLPNGQVYG 375
CY++ + +CP C P++ L + LP AHC+ SRLVC IS +NE+N PMVLPNG VYG
Sbjct: 1352 CYQQGHKMPECPVCSHPMNILGQSLPFAHCAQSRLVCPISGQVMNENNPPMVLPNGFVYG 1411
Query: 376 EKALKQMMKEHGS-IICPKTKEVFCMKRVEKVYVM 409
E +L+ M E G I CP+TK+ + ++ EKVYVM
Sbjct: 1412 ENSLRSMSVERGGRIQCPRTKDDYLFEQAEKVYVM 1446
>SB_46390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 43.6 bits (98), Expect = 3e-04
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 127 QWRKVRLDRMLVDYFLRNGYYESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQRTARC 186
++++ ++R+++DY + GY E+A K +G + +D + ++ +
Sbjct: 20 RFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGTQPTAPLDSLDDRIKIREAVQKGDLEQA 79
Query: 187 LQWCSGNKSKLRKLNSTMEFNIRIQEFIELVREDRRLEAVRHARKHFSNHEEGQ 240
+ + + N + F+++ Q IEL+RE AV A+ FS E+GQ
Sbjct: 80 VSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQFS--EQGQ 131
>SB_44268| Best HMM Match : ACCA (HMM E-Value=0.58)
Length = 281
Score = 38.3 bits (85), Expect = 0.011
Identities = 23/118 (19%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 131 VRLDRMLVDYFLRNGYYESAWKLAESAGLR-ELTNVDIYSAAAAVEAELKSQRTARCLQW 189
V L+ ++ ++ R G + A +L + A L+ + + + + + K++ L+W
Sbjct: 115 VLLNEVICEHLFRQGRLDVAEELIKEANLQLDSSRKEPFQELNRILESCKNKDLDPALEW 174
Query: 190 CSGNKSKLRKLNSTMEFNIRIQEFIELVREDRRLEAVRHARK---HFSNHEEGQLVDI 244
+ +L+ S++EF + +F++L++ + EA+ ++R H +G +V++
Sbjct: 175 AKAHHFQLKSRGSSLEFKLHKLKFLDLLKCGLQQEALMYSRNFGPFAKEHTKGVVVEV 232
>SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)
Length = 367
Score = 33.9 bits (74), Expect = 0.24
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 33 KKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAIN 92
KK Q + + EA +++ A E+E ++ + + + + + E++ TM+RK SEAI
Sbjct: 181 KKEALKQLMLEKEA-ELAMANGELEDLEEYQVLQKDQEVEIARLEEEVQTMRRKHSEAI- 238
Query: 93 EELQVAYVCKKRLEHLKEQASALAEPSSTQT 123
++L+ ++ +KR + KE S + E + T
Sbjct: 239 QKLKAQFLREKR-GYQKESDSKIQEMAKQAT 268
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 32.3 bits (70), Expect = 0.73
Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 12/212 (5%)
Query: 24 AQVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVK-NQPITNTEIDSLLGGMVEKLTT 82
A E + KK + + E++ +K N+ T + L V+K
Sbjct: 631 AMAQCEEYKKKNNELNEALQAAETKNKAMEKEIDALKQNKDKDVTALKEELTSEVQKYKE 690
Query: 83 MKRKASE---AINEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVD 139
K A E A + ++V Y KK EH+KE+ A+++ S T KV +R V
Sbjct: 691 EKLMAEEKHLAEAQSIKVEYE-KKVEEHIKEKNEAISQLQSEIT------KVEKERNQVS 743
Query: 140 YFLRNGYYESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQRTARCLQWCSGNKSKLRK 199
L++ E+ E L E S + + + L+ +KS+L K
Sbjct: 744 EQLKSALEETGKASREEKLLLEDRMSQHESYYKKQLDDAANVHEEKLLRLQERSKSELEK 803
Query: 200 LNSTMEFNIRIQEFIELVREDRRLEAVRHARK 231
L + +E +I +E E+ R+D L+ + K
Sbjct: 804 LRAHLESDINEKE-KEIERKDNALKEFQEKNK 834
>SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)
Length = 1011
Score = 32.3 bits (70), Expect = 0.73
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 39 QRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAINEELQVA 98
Q + E + S +ME +K + +E SL G E+ M R+ AI E V
Sbjct: 64 QERVEQEKKNNRSLEFQMEQLKTK---FSEARSLNEGY-ERDMRMIREELLAIREIRDVP 119
Query: 99 YVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVDYFLRNGYYES-AWKLAE 155
KK + EQA A + S + L + K++ D++L D ++ N E+ WK AE
Sbjct: 120 AKRKKFRKQQAEQAEAESSSSESSEDLEEKMKMK-DKLLEDKYIENQRLEAEVWKSAE 176
>SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09)
Length = 481
Score = 30.7 bits (66), Expect = 2.2
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 43 DVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAINEELQVAYVCK 102
DV + A + ++ I +I++ + ++++ MK + S N+ + C
Sbjct: 384 DVTTLVGKARARDEANLRKVQIQAKDIEAQISTKLKEIERMKLEVSSLKNKRKRCDDECD 443
Query: 103 KRLEHLKEQASALAE-PSSTQTTLNQWRK 130
K + L ASA+ E PS+T TT ++ +K
Sbjct: 444 KLRKRLHSCASAMKEIPSATATTNDKGQK 472
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 30.7 bits (66), Expect = 2.2
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 39 QRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAINEELQVA 98
QR+ + R++ E+E ++ Q L G EK +KR + EE +
Sbjct: 336 QRIKEEAQRRILEDRREVEEIEQQAAEQ------LKGQQEKEEELKRLLERQLEEEKEKK 389
Query: 99 YVCKKRLEHLKEQASALAEPSSTQTTLN 126
++ E L + +AEP + T+++
Sbjct: 390 EYIRREAERLLREERLIAEPGNKSTSIS 417
>SB_27177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 30.3 bits (65), Expect = 3.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 218 REDRRLEAVRHARKHFSNHEEGQLVDIQHCMGMLAFPKDT 257
RE+R L +R+ RK + H+ L C G + F ++T
Sbjct: 111 REERLLNEIRNRRKEYELHKRASLNHRMKCQGEVYFGQET 150
>SB_7146| Best HMM Match : Pox_A_type_inc (HMM E-Value=2.7)
Length = 467
Score = 30.3 bits (65), Expect = 3.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 119 SSTQTTLNQWRKVRLDRML--VDYFLRNGYYESAWKLAESAGLRE 161
++ T++ ++ K +R L +D L G YE +WK ESA E
Sbjct: 364 NTIMTSMEEYEKPLFERKLAKIDEVLHQGLYEYSWKTLESADFVE 408
>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
Length = 551
Score = 29.9 bits (64), Expect = 3.9
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 43 DVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAINEELQVAYVCK 102
+ E + E+ T+ + I+ E+ L +KLT ++R+ E + EL K
Sbjct: 48 NTEISSLQEGMQELGTIAEKEISLDEMQKCLEEKEDKLTQLQRRV-EVLEAEL------K 100
Query: 103 KRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVDYFLRNGYYESAWKLAESAGLREL 162
K E K S L TQT L + ++V ++N + +
Sbjct: 101 KECESCKNYESQLCR---TQTQLK-----TVHFLVVYVQVKNTLETQVMNIENELQSTRV 152
Query: 163 TNVDIYSAAAAVEAELKSQRTA 184
T + S A+E ELKSQ+ A
Sbjct: 153 TLESVTSDKDALETELKSQKEA 174
>SB_54125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 29.5 bits (63), Expect = 5.2
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 319 ESSQAADCPACQAPLSGLARQLP-HAHCS-HSRLVCRISRLPLNEHNQPMVLPNG 371
+ +Q P PLS A H+HC RL+ I P+ + N PM P G
Sbjct: 31 QGTQRYQLPIHPIPLSTQATSAYWHSHCQGEGRLILNIRDRPIRQQNLPMDPPTG 85
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 29.5 bits (63), Expect = 5.2
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 67 TEIDSLLGGMVEKLTTMKRKASEAINEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLN 126
+E+DSLL V K + E NE+L KK ++ +EQ +AL + S + L
Sbjct: 834 SELDSLLKETVNKNAASLKACEERYNEQLD---KLKKDADNKEEQLNALGKESEDKNKLL 890
Query: 127 QWRKVRLD 134
+ ++ ++
Sbjct: 891 EAARLEIE 898
>SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089)
Length = 374
Score = 29.5 bits (63), Expect = 5.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 68 EIDSLLGGMVEKLTTMKRKASEAINEELQVAYVCKKRLEHLKEQ 111
EI+ L G E+L KRKA+ A +E ++ K E LK Q
Sbjct: 149 EIEQKLDGKAEELAAEKRKATRATSEADKLREKVKSLQEQLKVQ 192
>SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)
Length = 216
Score = 29.1 bits (62), Expect = 6.8
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 17 TVYNYDHAQVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGM 76
T+ + ++A++ ++ + K AQ++ ++A + S + + + G
Sbjct: 22 TMLSEENAKLRKQLDDTKRELAQQLNQIQALKQSQNTHKEPSQSESTTQQLDQSEKFGNQ 81
Query: 77 VEKLTTMKRKASEAINEELQVAYVCKKRLEHLKEQASALAEPSS-TQTTLNQWRKVRLD- 134
VE++ + ++ +A EL A K E L + +L + T Q K + +
Sbjct: 82 VEEIHNLTKQLKQA-KLELDQANKIKDDYEKLNSKTKSLEDKIIYLDATKRQLPKEKDEL 140
Query: 135 RMLVDYFLRN-GYYES--AWKLAESAGLRELTNV---DIYSAAAAVEAELKSQRTARCLQ 188
+ VD+ + G +E+ A E+ LR L N+ D+Y +EAE+K+ A Q
Sbjct: 141 KSRVDHLEDSIGDFETEKAKLFTENEELR-LANLEIQDVYRERGKLEAEIKTAMEAEIRQ 199
Query: 189 WCSGNKS 195
NK+
Sbjct: 200 LSKENKT 206
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 29.1 bits (62), Expect = 6.8
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 33 KKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAI- 91
KK R AQ++ D ++++ ++ +++ + +++ + GG+VEK+ T++R+ SE
Sbjct: 453 KKIREAQKLIDAA---MATSEKSIKVGESKGLWDSKEND--GGLVEKVETLEREVSEKTK 507
Query: 92 -NEEL-QVAYVCKKRLEHLK------EQASALAEPSSTQ--TTLNQWR-KVRLDRMLVDY 140
N+EL Q + + R+ L+ E + E S+ L++ R K+R+ VD
Sbjct: 508 ENQELTQSLHASQTRVMSLETENRILENQVRMMEESNKDLYKNLHEIRSKLRIQESKVDE 567
Query: 141 FLRNGYYESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQRTAR 185
LR ES KL++ N +EAE+ ++ TA+
Sbjct: 568 -LRIQKSESVRKLSQVLQSSLDRNTRFSFFLHQLEAEVTARETAQ 611
>SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 201 NSTMEFNIRIQEFIELVREDRRLEAVRHARKHFSNHEEGQLVDIQHCMGMLAFPKDTEVE 260
N T +F+I +++ + + +E R++R H + +L D+ M+A + +E
Sbjct: 522 NETFQFSIEMEKLADAILSLLVMEVDRYSRHHVIGQIDLELGDVVLANQMVAMEMEI-LE 580
Query: 261 PYRSLLARG 269
Y+S L G
Sbjct: 581 AYKSRLGLG 589
>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 28.7 bits (61), Expect = 9.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 188 QWCSGNKSKLRKLNSTMEFNIRIQEFIELVRE 219
Q CS +L LN + F + I EF++L+ E
Sbjct: 178 QRCSAKTQRLTSLNKMVLFLVHINEFLDLLEE 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,925,598
Number of Sequences: 59808
Number of extensions: 435396
Number of successful extensions: 1549
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1533
Number of HSP's gapped (non-prelim): 27
length of query: 409
length of database: 16,821,457
effective HSP length: 84
effective length of query: 325
effective length of database: 11,797,585
effective search space: 3834215125
effective search space used: 3834215125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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