Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002230-TA|BGIBMGA002230-PA|IPR007087|Zinc finger,
C2H2-type, IPR006594|Lissencephaly type-1-like homology motif,
IPR006595|CTLH, C-terminal to LisH motif, IPR013144|CT11-RanBPM
(409 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82080-2|CAB04951.1| 428|Caenorhabditis elegans Hypothetical pr... 122 5e-28
AC090999-19|AAK26156.1| 575|Caenorhabditis elegans Hypothetical... 32 0.85
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 31 2.0
Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical p... 30 2.6
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p... 30 2.6
Z68009-3|CAA92005.1| 817|Caenorhabditis elegans Hypothetical pr... 30 3.4
U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical pr... 30 3.4
AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical ... 30 3.4
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 30 3.4
Z22178-8|CAD82913.1| 307|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z22178-7|CAA80157.2| 288|Caenorhabditis elegans Hypothetical pr... 29 4.5
U80022-4|AAC25887.2| 469|Caenorhabditis elegans Expulsion defec... 29 4.5
U80022-3|AAV28354.1| 490|Caenorhabditis elegans Expulsion defec... 29 4.5
U80022-2|AAV28355.1| 510|Caenorhabditis elegans Expulsion defec... 29 4.5
U80022-1|AAV28356.1| 501|Caenorhabditis elegans Expulsion defec... 29 4.5
AF125953-1|AAD14702.2| 397|Caenorhabditis elegans Temporarily a... 29 4.5
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z79695-1|CAB01968.2| 291|Caenorhabditis elegans Hypothetical pr... 29 7.9
>Z82080-2|CAB04951.1| 428|Caenorhabditis elegans Hypothetical
protein W09G3.2 protein.
Length = 428
Score = 122 bits (294), Expect = 5e-28
Identities = 88/398 (22%), Positives = 172/398 (43%), Gaps = 15/398 (3%)
Query: 20 NYDHAQVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETV---KNQPITNTEIDSLLGGM 76
+Y ++PYE N ++R+ Q+ D A V+ AA ++ N+P++ + +
Sbjct: 38 DYCTFRIPYEELNIRFRNGQKDLDRAATGVAKAAELLQKKTAGSNEPVSRESLRRHFDLL 97
Query: 77 VEKLTTMKRKASEAINEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRM 136
+ ++ ++ E++ R + + E+ + + + T + + + R
Sbjct: 98 IRQVQEARKTVERITQSEIEQLDKITTRADRIHEEFEVTRDSENPRNT-EKLERQKFCRF 156
Query: 137 LVDYFLRNGYYESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQRTARCLQWCSGNKSK 196
+V + LR GY E A L + L +L +VD++ AV+ L CL WC + K
Sbjct: 157 IVWHMLRCGYIEPAKVLVKEMELEDLVDVDVFENMYAVQQALLDGNIQPCLAWCDRHHRK 216
Query: 197 LRKLNSTMEFNIRIQEFIELVREDRRLEAVRHARKHFSNHEEGQLV-DIQHCMGMLAFPK 255
LRKL S +E R QE + L+ EAV + +K+ + +G+ D++ MG +A
Sbjct: 217 LRKLESRIELVARQQEAVTLIELGNIPEAVAYVKKYIAPIAKGKFTEDLKKTMGAIACTL 276
Query: 256 DTEVEPYRSLLARGRWARLVRQFRAEHXXXXXXXXXXXXXXXXXXXXXXXNTPYPLQYYL 315
+ L A R+ + F E TP
Sbjct: 277 EQSRLRNPELHAADRYQKCAALFIEEAHRIFEIHGNTALATLIQYGLATQKTP------S 330
Query: 316 CYKESSQAAD---CPACQAPLSGLARQLPHAHCSHSRLVCRIS-RLPLNEHNQPMVLPNG 371
C+ + D C C+ + +A LP++H ++SR+ C +S +L ++ N P + P+G
Sbjct: 331 CHNDEKTPLDKQKCIVCRPDVWPIAENLPYSHVANSRIFCSLSGKLCDDDKNIPFLFPSG 390
Query: 372 QVYGEKALKQMMKEHGSIICPKTKEVFCMKRVEKVYVM 409
V G A++++ ++ + P K++ + ++Y +
Sbjct: 391 HVIGSAAIERLKRDDNKLYDPIHKKLIDEEEALRLYFL 428
>AC090999-19|AAK26156.1| 575|Caenorhabditis elegans Hypothetical
protein Y82E9BR.16a protein.
Length = 575
Score = 31.9 bits (69), Expect = 0.85
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 95 LQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVDYFLRNGYYESAWKLA 154
++ Y ++ H+ + AL S Q + +K+ L D+ L+N ++ S W +
Sbjct: 238 IEAIYFTNYQILHVVIASPALLFLSYCQKSAKNRKKIDFANFLADFLLKNRFFFSRWLVP 297
Query: 155 ESA 157
ESA
Sbjct: 298 ESA 300
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 30.7 bits (66), Expect = 2.0
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 21 YDHAQVPYEVFNKKYRSAQRVFDVEARQVSSA-ATEMETVKNQPITNTEIDSLLGGMVEK 79
+++ Q E + + RV + E Q SA E E K + E+++ ++ +
Sbjct: 616 HENTQKELEAHKETHTETVRVLEAEIDQFKSAFENEQEYGKEKSAKIRELEAQNKTLLSE 675
Query: 80 LTTMKRKAS--EAINEE----LQVAYVCKKRLEHLKEQASALAEPSSTQTT 124
+ +K A EA + L+ K +EHLK++ + L E ST+ T
Sbjct: 676 MEKVKHVAENLEAFTSDKDNLLEELESKNKNIEHLKQEIAQLNEKISTKET 726
>Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical
protein F45G2.2b protein.
Length = 390
Score = 30.3 bits (65), Expect = 2.6
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 20 NYDHAQVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEK 79
NY++A+ E+ + + + + E R A E K Q + S L EK
Sbjct: 77 NYENAKKASELERLREKEKKEWDEKERRMQMEAENEANQHKTQTEKLKDQISTLQTDFEK 136
Query: 80 LTTMKRKASEAINEEL--QVAYVCKKRLEHLKEQASALAE 117
++ +RKA E +N EL +VA K++ E +EQ L E
Sbjct: 137 VSA-QRKAQEQMNAELVDEVASF-KQKAERAEEQKKKLVE 174
>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
protein F45G2.2a protein.
Length = 1235
Score = 30.3 bits (65), Expect = 2.6
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 20 NYDHAQVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEK 79
NY++A+ E+ + + + + E R A E K Q + S L EK
Sbjct: 922 NYENAKKASELERLREKEKKEWDEKERRMQMEAENEANQHKTQTEKLKDQISTLQTDFEK 981
Query: 80 LTTMKRKASEAINEEL--QVAYVCKKRLEHLKEQASALAE 117
++ +RKA E +N EL +VA K++ E +EQ L E
Sbjct: 982 VSA-QRKAQEQMNAELVDEVASF-KQKAERAEEQKKKLVE 1019
>Z68009-3|CAA92005.1| 817|Caenorhabditis elegans Hypothetical
protein R09A8.3 protein.
Length = 817
Score = 29.9 bits (64), Expect = 3.4
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 127 QWR---KVRLDRMLVDYFLRNGYYESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQRT 183
+WR K++ +R D + G + +A S G +L + +IY A V A L + T
Sbjct: 541 KWRNVAKMKAERGRFDCTIHGG---KVFAVAGSNGNNDLKSCEIYDPKADVWAPLPNLAT 597
Query: 184 ARCLQWCS 191
ARC C+
Sbjct: 598 ARCHNGCA 605
>U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical
protein M03A1.3 protein.
Length = 669
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/74 (21%), Positives = 35/74 (47%)
Query: 42 FDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKASEAINEELQVAYVC 101
F + + + ++ET+K++ +T+ EID G ++ + K S +E +C
Sbjct: 361 FPIGSSNIDVKTYKLETLKSENLTSCEIDFYPGDVLLMSESSSLKWSNEKSEFFNFHEIC 420
Query: 102 KKRLEHLKEQASAL 115
++E L ++ L
Sbjct: 421 NPKIEGLSKEFKRL 434
>AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical
protein Y52D5A.1 protein.
Length = 914
Score = 29.9 bits (64), Expect = 3.4
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 32 NKKYRSAQRVFDVEARQVSS--AATEMETVKNQPITNTEIDSLLGGMV-EKLTTMKRKAS 88
N K ++ + V D E + T + KN +TN E+D V +KL K+ +
Sbjct: 716 NYKEKAPEAVKDHEIPNANRIPGTTRLNEPKNIEVTNHEVDDKTTERVYKKLREKKKSTA 775
Query: 89 EA----INEELQVAYVCKK--RLEHLKEQASALAEPSSTQTTLNQWRKVRLDRMLVD 139
+A +L + V KK RL+H + EPS+ T N +KV + V+
Sbjct: 776 KAKPIDAKSKLLLDRVPKKPYRLKHKPDGMMLCDEPSTFYKTNNPKKKVETSLLPVE 832
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/100 (18%), Positives = 45/100 (45%)
Query: 28 YEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDSLLGGMVEKLTTMKRKA 87
++V N+ + + D E + T ++V + P TN ++ + EK+T ++
Sbjct: 1274 FDVENENVLTDEDDSDGENTRKRKTPTSKKSVTSTPTTNDISRVIIPNIKEKMTLIETLL 1333
Query: 88 SEAINEELQVAYVCKKRLEHLKEQASALAEPSSTQTTLNQ 127
EA+ +E ++ + + + + P + +T +N+
Sbjct: 1334 KEAMRQECSWPFLQPVDSKEVPDYYDVIKRPMNLRTMMNK 1373
>Z22178-8|CAD82913.1| 307|Caenorhabditis elegans Hypothetical
protein F54C8.7b protein.
Length = 307
Score = 29.5 bits (63), Expect = 4.5
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 15 LNTVYNYDHAQVPYEVFNKKYRSAQRVFDVEARQVSSAAT--EMETVKNQPITNTEIDSL 72
+ TVYN + ++N + SA+ +DV+ +S+A + + KN P+ TE
Sbjct: 180 METVYNQTITDTLHTIYNTE--SARIEYDVDRNDISAATNPPQGQLTKNLPVGATEKCEE 237
Query: 73 LGGMVEKLTTMKRKASEAINEELQVAYVCKKRLEHLKEQASA 114
EKL K + EE +++ V +LE L+ +A
Sbjct: 238 KKAKYEKLKN-DAKIKMRLLEENRISVVA-AQLEKLQSALAA 277
>Z22178-7|CAA80157.2| 288|Caenorhabditis elegans Hypothetical
protein F54C8.7a protein.
Length = 288
Score = 29.5 bits (63), Expect = 4.5
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 15 LNTVYNYDHAQVPYEVFNKKYRSAQRVFDVEARQVSSAAT--EMETVKNQPITNTEIDSL 72
+ TVYN + ++N + SA+ +DV+ +S+A + + KN P+ TE
Sbjct: 161 METVYNQTITDTLHTIYNTE--SARIEYDVDRNDISAATNPPQGQLTKNLPVGATEKCEE 218
Query: 73 LGGMVEKLTTMKRKASEAINEELQVAYVCKKRLEHLKEQASA 114
EKL K + EE +++ V +LE L+ +A
Sbjct: 219 KKAKYEKLKN-DAKIKMRLLEENRISVVA-AQLEKLQSALAA 258
>U80022-4|AAC25887.2| 469|Caenorhabditis elegans Expulsion
defective (defecation)protein 2, isoform a protein.
Length = 469
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 362 HNQPMVLPNGQVYGEKALKQMMKEHGSII 390
HN+ +VLPNG V + ++QM EH + +
Sbjct: 220 HNETVVLPNGTVTVVQKVEQMRVEHPAFV 248
>U80022-3|AAV28354.1| 490|Caenorhabditis elegans Expulsion
defective (defecation)protein 2, isoform b protein.
Length = 490
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 362 HNQPMVLPNGQVYGEKALKQMMKEHGSII 390
HN+ +VLPNG V + ++QM EH + +
Sbjct: 241 HNETVVLPNGTVTVVQKVEQMRVEHPAFV 269
>U80022-2|AAV28355.1| 510|Caenorhabditis elegans Expulsion
defective (defecation)protein 2, isoform c protein.
Length = 510
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 362 HNQPMVLPNGQVYGEKALKQMMKEHGSII 390
HN+ +VLPNG V + ++QM EH + +
Sbjct: 261 HNETVVLPNGTVTVVQKVEQMRVEHPAFV 289
>U80022-1|AAV28356.1| 501|Caenorhabditis elegans Expulsion
defective (defecation)protein 2, isoform d protein.
Length = 501
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 362 HNQPMVLPNGQVYGEKALKQMMKEHGSII 390
HN+ +VLPNG V + ++QM EH + +
Sbjct: 252 HNETVVLPNGTVTVVQKVEQMRVEHPAFV 280
>AF125953-1|AAD14702.2| 397|Caenorhabditis elegans Temporarily
assigned gene nameprotein 304 protein.
Length = 397
Score = 29.5 bits (63), Expect = 4.5
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 16/138 (11%)
Query: 133 LDRMLVDYFLRNGYYESAWKLAESAGLRELTNVDIYSAAAAVEAELKSQRTARCLQWCSG 192
L ++++D+FL +GY E ++ + + DI + A E R C+
Sbjct: 173 LQQLVIDHFLHHGYSEVIETFSKEVNI-VVPKKDIDNMNARNEV-----RRLICVGEMES 226
Query: 193 NKSKLRKLNST------MEFNIRIQEFIELVREDRRLEAVRHARKHFSNHEE---GQLVD 243
K+ L T + F +R Q IE+VR+ E V + R H + + + +D
Sbjct: 227 AIEKMTTLCPTILEDDEINFIVRKQHLIEMVRQKLTKEPVEYFRAHLMKNGQRPCDEKMD 286
Query: 244 -IQHCMGMLAFPKDTEVE 260
I+ ML F + +VE
Sbjct: 287 IIERIFTMLVFNLEDDVE 304
>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 29.1 bits (62), Expect = 6.0
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 4 IKSMEHATLKFLNTVYNYDHAQVPYEVFNKKYRSAQRVFD-VEARQVSSAATEMETVKNQ 62
I S +H + DH + + +NKK+ ++ + + A SS+A + E ++
Sbjct: 553 ISSNQHVAAMMYAAQHETDHLAMILDDYNKKFNNSSPLSSIILALSSSSSANKTEITPSK 612
Query: 63 PITNTEIDSLLGGMVEKLTTMK 84
+ E+ +G +++ K
Sbjct: 613 QSSEQEVSQQIGSILQTFPDQK 634
>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 29.1 bits (62), Expect = 6.0
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 4 IKSMEHATLKFLNTVYNYDHAQVPYEVFNKKYRSAQRVFD-VEARQVSSAATEMETVKNQ 62
I S +H + DH + + +NKK+ ++ + + A SS+A + E ++
Sbjct: 553 ISSNQHVAAMMYAAQHETDHLAMILDDYNKKFNNSSPLSSIILALSSSSSANKTEITPSK 612
Query: 63 PITNTEIDSLLGGMVEKLTTMK 84
+ E+ +G +++ K
Sbjct: 613 QSSEQEVSQQIGSILQTFPDQK 634
>Z79695-1|CAB01968.2| 291|Caenorhabditis elegans Hypothetical
protein F27D4.2 protein.
Length = 291
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 46 ARQVSSAATEMETVKNQPITN-TEIDSLLGGMVEKLTTMKRKASEAINEELQVAYVCKKR 104
A + + EM ++ +Q +N +E++ + M+++ ++++ ++LQ A+ K+
Sbjct: 4 ADHIDAIKKEMTSLSSQFNSNKSELERSKQDLSSMQLQMQQQMNDSVQQDLQKAHDTSKK 63
Query: 105 LEHLKEQASALAEPSSTQTTL 125
L++L AL S Q+ L
Sbjct: 64 LDNLARTFLALITDPSQQSQL 84
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,867,512
Number of Sequences: 27539
Number of extensions: 327305
Number of successful extensions: 1197
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 24
length of query: 409
length of database: 12,573,161
effective HSP length: 83
effective length of query: 326
effective length of database: 10,287,424
effective search space: 3353700224
effective search space used: 3353700224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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