GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002229-TA|BGIBMGA002229-PA|undefined
         (92 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   0.25 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   1.0  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   2.4  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    24   3.1  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   4.1  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    23   5.5  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    23   5.5  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    23   9.5  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.9 bits (59), Expect = 0.25
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 1   MKELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQ 45
           +KE   L NE   +  Q+V + + +A L +K+ I+E  L +  R+
Sbjct: 100 LKENGTLKNEEKCLRMQIVAQEEYVAPLIQKLEIIEKKLDKSFRK 144


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 21  RNDEIALLYEKIRILEVTLQRGER 44
           +N+EI LL+++IRI    L++ E+
Sbjct: 879 KNNEIELLHDQIRITNAKLEKREK 902


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/48 (22%), Positives = 26/48 (54%)

Query: 2   KELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQR 49
           +E E LM+E ++ GA+    + +I++L + +  ++       R+  +R
Sbjct: 384 EEEEALMSEEEINGAKFAAVDKQISMLQDTLEAMKAKKMNRMRKPRRR 431


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 17  QLVRRNDEIA-LLYEKIRILEVTLQRGERQYEQ 48
           +L R+ D++  LL E+      TL RGE+ +EQ
Sbjct: 369 ELKRKVDDVRELLDEEEESFSRTLDRGEKMFEQ 401


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 3   ELEGLMNERDVVGAQLVRRNDEIALLYEKIR 33
           EL+ L+ + +     L  RN+++ + Y+K+R
Sbjct: 678 ELQQLLKQNESASELLKSRNEKLCVDYDKLR 708


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 236

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 24 EIALLYEKIRILEVTLQRGERQYEQRVED 52
          E+ LL EK+R+L++ L   E+   + +++
Sbjct: 26 EVDLLDEKLRVLQLLLANCEQSRNENLQE 54


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 68  NLLSKGIENMTDLRLELTDDSK 89
           N+LS  I+N  +  +E+TD +K
Sbjct: 254 NILSHVIDNQIEYSMEITDKTK 275


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 8/36 (22%), Positives = 20/36 (55%)

Query: 1   MKELEGLMNERDVVGAQLVRRNDEIALLYEKIRILE 36
           ++E EG+++    + +++  RN++   L E    L+
Sbjct: 742 LREFEGILSSNSSLKSEIEERNNQYVTLRENFDSLQ 777


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.135    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 303,824
Number of Sequences: 5004
Number of extensions: 7825
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 9
length of query: 92
length of database: 2,362,478
effective HSP length: 62
effective length of query: 30
effective length of database: 2,052,230
effective search space: 61566900
effective search space used: 61566900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)