GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002229-TA|BGIBMGA002229-PA|undefined
         (92 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916     28   1.1  
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742...    27   2.5  
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    26   3.4  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    25   5.9  
12_02_0651 + 21522089-21522128,21522472-21522593,21523386-215235...    25   7.8  
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728...    25   7.8  

>02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916
          Length = 722

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 2   KELEGLMNERDVVGAQLVRRNDEIALLYEKIRILE 36
           + +  +M E D   A L  +  +IALL++KI  LE
Sbjct: 335 ESMSSVMKELDAANALLQVKESQIALLHDKIESLE 369


>07_03_0532 +
           19171290-19171394,19173122-19173302,19173761-19174245,
           19174877-19176283,19176413-19176628
          Length = 797

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 3   ELEGLMNERDVVGAQLVRRNDEIALLYEKIRILE 36
           +LE L  + + + +QL   N EIA L EK+++LE
Sbjct: 564 DLEALGVQTNELRSQLQSANSEIAGLNEKVKMLE 597



 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 3   ELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQ 40
           E+E + N R+ +  ++   + EI  L +K RILE  L+
Sbjct: 408 EMEAMENRRNELEGRIELAHGEITSLLDKGRILEERLE 445



 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 4   LEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQRV 50
           +E L  ++     +L    +EIA L +K+ ILE+ +Q  ER   +++
Sbjct: 513 IEALEEKKKGTEHELESAREEIASLQKKVSILELKIQE-ERALSEKL 558


>02_04_0481 +
           23284296-23284448,23284553-23284753,23284855-23287971,
           23288510-23289353,23289468-23290120,23290573-23290676,
           23290898-23291000
          Length = 1724

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 1   MKELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQR 49
           ++E + L NE+D +  +L R  ++ +LL EK   L + +++G+   ++R
Sbjct: 701 VQETDALKNEKDSLQKELERVEEKSSLLREK---LSMAVKKGKGLVQER 746


>05_07_0093 -
           27648656-27648736,27649034-27649147,27649229-27649288,
           27649464-27649687,27649799-27649886,27650326-27650532,
           27650566-27650784,27650903-27651001,27651439-27651504,
           27651654-27651737,27651829-27651888,27652041-27652325,
           27652789-27652836,27652988-27653034,27653442-27653556,
           27653958-27654032,27654227-27654298,27654944-27656124,
           27656613-27656757
          Length = 1089

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 2   KELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRG 42
           +++  L  ERD +  +  +++D  ALL EK  I+   +  G
Sbjct: 490 RKVYALTKERDTLRREQNKKSDAAALLKEKDEIISQVMAEG 530


>12_02_0651 +
           21522089-21522128,21522472-21522593,21523386-21523544,
           21523653-21523730,21523821-21523865,21524121-21524187,
           21524261-21524322,21524407-21524546,21524752-21524878,
           21524957-21525071,21525210-21525298,21525533-21525616,
           21525857-21526219,21526300-21526689,21526835-21526894,
           21527530-21527553
          Length = 654

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 2   KELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEV 37
           K L  ++N R+ +  +L  +  E  +L EKI  LE+
Sbjct: 576 KNLSSVINSREQLERRLANKEKEAEMLKEKIAGLEL 611


>02_02_0157 -
           7280335-7280541,7280656-7280762,7280918-7281097,
           7281182-7281277,7281378-7281459,7281553-7283037,
           7283376-7283450,7283521-7283598,7283708-7283791,
           7283885-7283965,7284073-7284291,7284398-7284648,
           7284748-7284796
          Length = 997

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 2   KELEGLMNERDVVGAQLVRRNDE-IALLYEKIRILEVTLQR 41
           KE E ++ E+D +  +L +  +E I LL EK  I+ +  Q+
Sbjct: 561 KEKEEIIKEKDDIVVRLTKEKEEIIKLLEEKEDIISLMKQK 601


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.135    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,686
Number of Sequences: 37544
Number of extensions: 43840
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 8
length of query: 92
length of database: 14,793,348
effective HSP length: 70
effective length of query: 22
effective length of database: 12,165,268
effective search space: 267635896
effective search space used: 267635896
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)