Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002229-TA|BGIBMGA002229-PA|undefined
(92 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052) 87 1e-18
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-05
SB_44883| Best HMM Match : PqqD (HMM E-Value=2.2) 30 0.23
SB_28246| Best HMM Match : M (HMM E-Value=0.0007) 29 0.52
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 29 0.69
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.6
SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16) 27 2.1
SB_662| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_48668| Best HMM Match : WXG100 (HMM E-Value=2.8) 27 2.8
SB_26027| Best HMM Match : DUF164 (HMM E-Value=0.1) 27 2.8
SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1) 26 3.7
SB_1116| Best HMM Match : THAP (HMM E-Value=0.00013) 26 3.7
SB_33966| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.7
SB_56476| Best HMM Match : IncA (HMM E-Value=4.6) 26 4.8
SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14) 26 4.8
SB_52326| Best HMM Match : M (HMM E-Value=0.38) 25 6.4
SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.5
SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13) 25 8.5
>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
Length = 649
Score = 87.4 bits (207), Expect = 1e-18
Identities = 42/89 (47%), Positives = 58/89 (65%)
Query: 2 KELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQRVEDXXXXXXXXX 61
KEL+ ++ ERD++G QLVRRNDE+ALLYEKI+I + TL +GE QY QR+ED
Sbjct: 374 KELDQVIGERDILGTQLVRRNDELALLYEKIKIQQSTLNKGEIQYRQRLEDIRLLKLEIK 433
Query: 62 XXXXXXNLLSKGIENMTDLRLELTDDSKE 90
N+L+K + N+ DLR E+ +E
Sbjct: 434 KLRREKNILTKNVANVEDLRREVYHHQRE 462
>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 731
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 2 KELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQRVEDXXXXXXXXX 61
K E + ER+ +G QL+ RN+E+ + YEK+ I + ++ G+ + + R E+
Sbjct: 443 KRYETSVQERNDMGIQLIERNEEVCVFYEKLNIQDTMIRNGDVELKAREEEIRFLKMELN 502
Query: 62 XXXXXXNLLSKGIENMTDLRLEL 84
L +K + N L EL
Sbjct: 503 EIRRGIGLANKNMPNKRALDNEL 525
>SB_44883| Best HMM Match : PqqD (HMM E-Value=2.2)
Length = 83
Score = 30.3 bits (65), Expect = 0.23
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 10 ERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQRV 50
ERD A L R +++I L +K++I T Q+ +R+YE ++
Sbjct: 34 ERDNAVADLRRTHNQIENLEDKLKIALETQQQEKRRYEDKI 74
>SB_28246| Best HMM Match : M (HMM E-Value=0.0007)
Length = 1121
Score = 29.1 bits (62), Expect = 0.52
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 3 ELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQ 48
ELEG+ E + ++L RR+ +A + EK++ +E L+ +Y++
Sbjct: 304 ELEGMRGEVQNLTSELHRRDTSVANVSEKLQRMERELRETNTRYDR 349
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 1 MKELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQRV 50
++E L+ +RD + + ++ DEI L K+ IL ++ +YE+ +
Sbjct: 204 LEEKRHLVQQRDELENTVNKKQDEIEALNAKLEILTREVEEERHRYEEEI 253
>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 3 ELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVT 38
ELE + ERD + A L + ++ L +K+R LE +
Sbjct: 240 ELERIKEERDALNAALREKEKQLLQLTKKVRELETS 275
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 4 LEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQ 48
++ L R+ G +LV R +EI LYE+ + L+ ER YE+
Sbjct: 1387 MKKLQEARESEGKELVLRTEEIEKLYERNK----ELREKERDYEE 1427
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 4 LEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQRVED 52
L GL N+ V+G ++ I+ L + L+ T+Q + E+RVE+
Sbjct: 1240 LSGLWNQLKVLGTEVQSLQTRISELQRENENLKQTIQETSDKNERRVEE 1288
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 3 ELEGLMNERDVVGAQLVRRNDEIALL 28
E++ L RDV A R NDE+ L
Sbjct: 1851 EIQNLQQSRDVTAADKSRINDEVCQL 1876
>SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16)
Length = 558
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 5 EGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQ-YEQRVE 51
E L+NE ++ A+L N+E+ KI L+ L+R E + E RVE
Sbjct: 132 ENLINENLLLQAELDNLNNELKAKDNKIESLQDELERMENEKTELRVE 179
>SB_662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/82 (17%), Positives = 39/82 (47%)
Query: 4 LEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQRVEDXXXXXXXXXXX 63
LE +++++D +QL N +++ ++ ++ L++ + E+R+
Sbjct: 251 LESMVSDKDEEISQLKGTNADLSSQIKESKVKNQELEQRVKDLEERMSQASVNQNAKEQL 310
Query: 64 XXXXNLLSKGIENMTDLRLELT 85
LS+ ++ M+DL +++
Sbjct: 311 KSLQQTLSQKLQEMSDLNEKIS 332
>SB_48668| Best HMM Match : WXG100 (HMM E-Value=2.8)
Length = 214
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 1 MKELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQRV 50
+KE+E +N R+ + +L + ++ + + LE L+R +Q E +V
Sbjct: 163 IKEIEKALNNREALEDELKQTKSKLKSMESRNNELEKKLRRASQQSEGKV 212
>SB_26027| Best HMM Match : DUF164 (HMM E-Value=0.1)
Length = 715
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 5 EGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQ-YEQRVE 51
E LMNE ++ A+L + E+ + KI L+ L+R E + E RVE
Sbjct: 531 ENLMNENFLLKAELNKLKYELKVKDNKIESLQDELERMENEKTELRVE 578
>SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1)
Length = 301
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 71 SKGIENMTDLRLELTDDSKEKP 92
S GIEN++ +RLE+ D+++ P
Sbjct: 164 SCGIENISPMRLEVLRDTRDSP 185
>SB_1116| Best HMM Match : THAP (HMM E-Value=0.00013)
Length = 331
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 1 MKELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGER 44
+KE++ + + D+ ++ DE++ + +++ ILE+ R R
Sbjct: 278 LKEMQSVACQTDLTSQEIQSLEDELSKVKQQLYILEMKTMRSNR 321
>SB_33966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 5 EGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQ-YEQRVE 51
E LMNE ++ A+L + E+ + KI L+ L+R E + E RVE
Sbjct: 113 ENLMNENLLLKAELNKLKYELKVKDNKIESLQDELERMENEKTELRVE 160
>SB_56476| Best HMM Match : IncA (HMM E-Value=4.6)
Length = 175
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 RRNDEIALLYEKIRILEVTLQRGER-QYEQRVED 52
RRND++ + EK R L GER ++ +V D
Sbjct: 89 RRNDQLRMFAEKFRHKVSDLTNGERKKFRHKVSD 122
>SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)
Length = 388
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 5 EGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQ-YEQRVE 51
E L+NE ++ A+L N+E+ +I L+ L+R E + E RVE
Sbjct: 142 ENLINENLLLQAELDNLNNELKAKDNRIESLQDELERMENEKTELRVE 189
>SB_52326| Best HMM Match : M (HMM E-Value=0.38)
Length = 237
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 1 MKELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQRVED 52
+KE+ N +D G + ++I L E+ + LEV + +G++ Y++ D
Sbjct: 30 VKEVRETRNIKDDKGKESKGLPEKIQALEERNKKLEVQVIKGKQAYDKVTRD 81
>SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 71 SKGIENMTDLRLELTDDSKEKP 92
S GIEN++ +R+E+ D+++ P
Sbjct: 468 SCGIENISPMRVEVLRDTRDSP 489
>SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13)
Length = 473
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 71 SKGIENMTDLRLELTDDSKEKP 92
S GIEN++ +R+E+ D+++ P
Sbjct: 318 SCGIENISPMRVEVLRDTRDSP 339
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.135 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,436
Number of Sequences: 59808
Number of extensions: 55324
Number of successful extensions: 125
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 23
length of query: 92
length of database: 16,821,457
effective HSP length: 69
effective length of query: 23
effective length of database: 12,694,705
effective search space: 291978215
effective search space used: 291978215
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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