GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002229-TA|BGIBMGA002229-PA|undefined
         (92 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   1.8  
AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.      22   4.1  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    21   7.2  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    21   9.5  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 68  NLLSKGIENMTDLRLELTDDSKE 90
           +LLS  + N+TDL++   DD ++
Sbjct: 79  SLLSSMVSNLTDLQVANVDDVED 101


>AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 18  LVRRNDEIALLYEKIRILEVTLQR 41
           LV+ + ++ALL     +LEVTLQ+
Sbjct: 219 LVQEDSDVALLRIFECLLEVTLQK 242


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 23   DEIALLYEKIRILEVTLQRGERQYEQRVE 51
            D +A L+   R      +RG R+ E+RVE
Sbjct: 1056 DGVAELFRSNRGRARRTRRGRRRAEERVE 1084


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 5   EGLMNERDVVGAQLVRRNDEIALLYE 30
           +G++    V GA+++   D+I LL E
Sbjct: 621 DGVLRVAMVEGARIIGYADDIVLLVE 646


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.135    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,610
Number of Sequences: 2123
Number of extensions: 1448
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 92
length of database: 516,269
effective HSP length: 54
effective length of query: 38
effective length of database: 401,627
effective search space: 15261826
effective search space used: 15261826
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)