GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002229-TA|BGIBMGA002229-PA|undefined
         (92 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    27   1.8  
U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    25   5.4  
Z47745-1|CAA87663.1|  358|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 4   LEGLMNERDVVGAQLVRRNDEIALLYEKIRIL 35
           +E L NE++ +  ++ ++ND  A+  E+I+I+
Sbjct: 153 IERLKNEKNEISEEIQKQNDAFAVFSEEIQIV 184


>U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical
           protein C01G5.5 protein.
          Length = 287

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 71  SKGIENMTDLRLELTDDSKEK 91
           S+  EN T L LEL+DD  EK
Sbjct: 248 SRVAENYTSLSLELSDDEFEK 268


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 2   KELEGLMNERDVVGAQLVRRNDEIALLYEKIRILEVTLQRGERQYEQRVE 51
           +++  L +  ++V AQL+    E  +   K+  LE+ ++   R Y   +E
Sbjct: 582 EKIAELTSSLEMVAAQLLSSQQETDVAVTKVENLELKMEEAHRMYLLDIE 631


>Z47745-1|CAA87663.1|  358|Caenorhabditis elegans Hypothetical
           protein T19H5.2 protein.
          Length = 358

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 8   MNERDVVGAQLV-RRNDEIALLYEKIRILEVTLQRGERQY 46
           + + ++ G +L+  RN E  L  E ++ L++ L++ E+QY
Sbjct: 171 LKDNELDGVELLWNRNTEETLYCELLQHLKMGLEKQEKQY 210


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.135    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,710
Number of Sequences: 27539
Number of extensions: 42421
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 4
length of query: 92
length of database: 12,573,161
effective HSP length: 69
effective length of query: 23
effective length of database: 10,672,970
effective search space: 245478310
effective search space used: 245478310
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)