GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002228-TA|BGIBMGA002228-PA|undefined
         (64 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   0.25 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   0.25 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    19   4.0  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    18   7.1  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    18   7.1  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 0.25
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2    KNRKSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYDKLVVKV 52
            +N ++F +  + E Y + + + +K +   LK  R+K    FL+ + L V V
Sbjct: 1190 RNEETFWNELI-EQYLHPIEDDKKKVSAELKDLRDKMVFTFLMLNSLYVIV 1239


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 0.25
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2    KNRKSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYDKLVVKV 52
            +N ++F +  + E Y + + + +K +   LK  R+K    FL+ + L V V
Sbjct: 1190 RNEETFWNELI-EQYLHPIEDDKKKVSAELKDLRDKMVFTFLMLNSLYVIV 1239


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
          protein 20 protein.
          Length = 124

 Score = 19.0 bits (37), Expect = 4.0
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 12 VSEDYSNAMLEKR 24
          ++E+Y N +LEK+
Sbjct: 41 LTENYVNCLLEKK 53


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 18.2 bits (35), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 9   DIYVSEDYSNAMLEKRKALL 28
           +IYV +  SN    +RK LL
Sbjct: 196 NIYVCQTVSNFEYFQRKILL 215


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 18.2 bits (35), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 9   DIYVSEDYSNAMLEKRKALL 28
           +IYV +  SN    +RK LL
Sbjct: 122 NIYVCQTVSNFEYFQRKILL 141


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808
Number of Sequences: 317
Number of extensions: 399
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 64
length of database: 114,650
effective HSP length: 43
effective length of query: 21
effective length of database: 101,019
effective search space:  2121399
effective search space used:  2121399
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)